Protein Info for Pf1N1B4_3340 in Pseudomonas fluorescens FW300-N1B4

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 315 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 37 to 56 (20 residues), see Phobius details amino acids 68 to 86 (19 residues), see Phobius details amino acids 95 to 115 (21 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 150 to 168 (19 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details amino acids 250 to 268 (19 residues), see Phobius details amino acids 274 to 293 (20 residues), see Phobius details PF00892: EamA" amino acids 11 to 139 (129 residues), 52.3 bits, see alignment E=3.4e-18 amino acids 160 to 292 (133 residues), 58.5 bits, see alignment E=4.2e-20

Best Hits

KEGG orthology group: None (inferred from 68% identity to pfl:PFL_1488)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166P8Z8 at UniProt or InterPro

Protein Sequence (315 amino acids)

>Pf1N1B4_3340 putative membrane protein (Pseudomonas fluorescens FW300-N1B4)
MKRTGFAAAHVGMLLWALLIAVSFSAAAQVSQAIDPILLTGLRLLFCALVFLPLLVFKGD
TAMNIQGLLSHAVLGMLLALYFGSLFEALRYTSAINTGTMFTLVPLLTLLFEAFLMPDSS
LKKRVLPMLTAAAGAVLLVLKGAGPDELPSLYALSVYGIGCLAMALYSPLSQRLKTNSLK
GRGPVGMTFWNMLFGALFLLAFCGFSGGWRSASLLTASDLWWLMYLALFATLATFWLLHR
AIGVIAPSSVISYIYLSTLFITLFHWFWLHESPLTQEIIGALLVGIGMLALLISSRDAIP
AQPSALKASGQLSRD