Protein Info for Pf1N1B4_3256 in Pseudomonas fluorescens FW300-N1B4

Annotation: Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 transmembrane" amino acids 41 to 57 (17 residues), see Phobius details PF02770: Acyl-CoA_dh_M" amino acids 76 to 163 (88 residues), 34.8 bits, see alignment E=7.5e-13

Best Hits

KEGG orthology group: None (inferred from 85% identity to pfo:Pfl01_1288)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162AWT8 at UniProt or InterPro

Protein Sequence (293 amino acids)

>Pf1N1B4_3256 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme (Pseudomonas fluorescens FW300-N1B4)
MPWQTLLKRRDRLPADPDLGEGFATLLQQLGAVSPFELAVAGARLMATPGLAFLVGYQAA
LRMLWPSAPLSLGALCATEQRSLRVADMQTRLRDLRLNGRKDFVTAGDAADWLLVAARSE
EPGEVPRLNLAVVYPGEPGVRLEKLAPMPLMPDIGHGRLFLDNALCELLAGDGWDAYVKP
FRTLEDIYVLSAMTAWLFGVGQDNDWPQTLQLRLLALLAGCAEVSRQAPNNPAGHVLLGG
LFAQFDGLKAEVNQALADGPPQWAAMWQRDQTVMDLAAGARGKRLAKALAGLS