Protein Info for Pf1N1B4_3223 in Pseudomonas fluorescens FW300-N1B4

Annotation: Major facilitator family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 47 to 67 (21 residues), see Phobius details amino acids 80 to 106 (27 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 212 to 234 (23 residues), see Phobius details amino acids 254 to 277 (24 residues), see Phobius details amino acids 289 to 308 (20 residues), see Phobius details amino acids 314 to 339 (26 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details PF07690: MFS_1" amino acids 17 to 368 (352 residues), 172.6 bits, see alignment E=1.7e-54 PF00083: Sugar_tr" amino acids 45 to 191 (147 residues), 29.2 bits, see alignment E=7e-11 PF03137: OATP" amino acids 205 to 304 (100 residues), 31.4 bits, see alignment E=1e-11

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfo:Pfl01_1254)

Predicted SEED Role

"Major facilitator family transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166P6H3 at UniProt or InterPro

Protein Sequence (449 amino acids)

>Pf1N1B4_3223 Major facilitator family transporter (Pseudomonas fluorescens FW300-N1B4)
MQNSTQAANAWRILFLLFLANLFNFFDRTIPAIIIEPIRMEWHLSDFQLGIIGTAFTIVY
AIAGLPLGRLADTGSRSKLMGWGLAAWSGLTAVNGLVGSFWSFLIVRMGIGIGEASYAPA
ANSLIGDLFPAHRRARAMGIFMLGLPLGLLLAFFTIGWMVKAFDSWRAPFFIAAVPGLVL
AVFMFFIKEPKRGAAESVQVSQERVDRPIRRVLAVPTFLWLVMAGLCFNFATYACNSFLV
PMLQRYFLMPLQEAAVATGVIVGVTGLFGLTLGGWIADKIHQRVANGRLLFAAFSLIIST
VCTAWALHAGRIEIGVFVAVFSLGWLFAYNFYTCVYTAIQDVVEPRLRATAMALFFAGLY
LLGGGLGPVVVGGLSDHFAHTAMLSAGAEQMTEAFKAVGLHDAMYLIPVALFFTMVFLFL
ASRCFVRDAKRMKEGLVAVVEPAGSAVTA