Protein Info for Pf1N1B4_3193 in Pseudomonas fluorescens FW300-N1B4

Annotation: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details amino acids 133 to 150 (18 residues), see Phobius details PF05425: CopD" amino acids 48 to 150 (103 residues), 59 bits, see alignment E=2.8e-20

Best Hits

KEGG orthology group: None (inferred from 84% identity to pba:PSEBR_a1167)

Predicted SEED Role

"Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BPJ0 at UniProt or InterPro

Protein Sequence (152 amino acids)

>Pf1N1B4_3193 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase (Pseudomonas fluorescens FW300-N1B4)
MTPFGIVYTLHVIAALVWVGGMFFAWMVLRPAAMKALEGPARLKLWVEVFQGFFRWVWIA
VVLLPISGVGMIHLQFAGFEAAPRYVQVMMGLYVVMTALFIRIQALMLPELRTAVAAQDW
PTGAAVLGKIRRLVGINLVVGLVLVAIAAARP