Protein Info for Pf1N1B4_3119 in Pseudomonas fluorescens FW300-N1B4

Annotation: Holin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 46 to 65 (20 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details PF16085: Phage_holin_3_5" amino acids 1 to 110 (110 residues), 187.9 bits, see alignment E=2.6e-60

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfo:Pfl01_1137)

Predicted SEED Role

"Holin"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166P4L2 at UniProt or InterPro

Protein Sequence (115 amino acids)

>Pf1N1B4_3119 Holin (Pseudomonas fluorescens FW300-N1B4)
MTNEQQALLDMPIWLVIVLALVGGVSGEMWRADKEGARGWSLLRRLALRSGACMICGVSA
IMLLYAAGMSIWAAGAFGCLTAMAGADVAIGLYERWAAKRIGVCEVPPRDTPQDH