Protein Info for Pf1N1B4_3092 in Pseudomonas fluorescens FW300-N1B4

Annotation: Outer membrane protein assembly factor YaeT precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 796 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 753 to 774 (22 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 23 to 796 (774 residues), 865 bits, see alignment E=2.6e-264 PF07244: POTRA" amino acids 92 to 171 (80 residues), 56.1 bits, see alignment E=9.8e-19 amino acids 176 to 262 (87 residues), 68.3 bits, see alignment E=1.6e-22 amino acids 265 to 343 (79 residues), 61.8 bits, see alignment E=1.7e-20 amino acids 347 to 419 (73 residues), 57.5 bits, see alignment E=3.7e-19 PF01103: Omp85" amino acids 447 to 796 (350 residues), 321.8 bits, see alignment E=1.3e-99

Best Hits

KEGG orthology group: K07277, outer membrane protein (inferred from 96% identity to pfo:Pfl01_1109)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166P458 at UniProt or InterPro

Protein Sequence (796 amino acids)

>Pf1N1B4_3092 Outer membrane protein assembly factor YaeT precursor (Pseudomonas fluorescens FW300-N1B4)
MKRLLLTAVLTVLMIAEVHAESFTISDIRVNGLQRVSAGSVFGALPLNVGEQADDRRLVE
STRALFKTGFFQDIQLGRDGNVLVITVVERPSVASIEIEGNKAISTEDLMKGLKQSGLAE
GEIFQRATLEGVRNELQRQYVAQGRYSATVDTEVVPQPRNRVGLKVNINEGTVAAIQHIN
VVGNTVFPDEDLIDLFELKTSNWLSFFKNDDKYAREKLSGDLERLRSYYLDRGYINMDIA
STQVSITPDKKHVYITVNVNEGEKYTVRDVKLSGDLKVPEDQIKSLLLVQKGQVFSRKLM
TTTSELITRRLGNEGYTFANVNGVPQPHDDDHTVDITFAVDPGKRAYVNRINFRGNTKSE
DEVLRREMRQMEGGWASTYLIDQSKTRLERLGFFKEVNVETPAVPGVDDQVDVNYSVEEQ
ASGSITASVGFAQSAGLILGGSITQNNFLGTGNKVSVGLTRSEYQSRYNFGYVDPYWTAD
GVSLGYNAFYRTTDYDELDADLTSYAVDSLGAGVNVGYPISETSRLTFGLSAQQDDIKTG
QYTVDEIFDFVNREGDSYLNFKASAGWSESTLNKGVLATRGHSQSLTLETTTPGSDLSFF
KLDYRGQLFQPITENYTVRLHTELGYGDGYGSTDGLPFYENYYAGGFNSVRGFKDSTLGP
RSTPSRGQAVTGNAGTIADPDQDPLPFGGNVLIQGGVEVLFPLPFVKDQRSLRTSVFWDV
GNVFDSNCDKTTNANVGSTAQTECNDISLSNVASSVGLGVTWVTALGPLSFALAMPIKKP
DDAETQVFQFSLGQTF