Protein Info for Pf1N1B4_3085 in Pseudomonas fluorescens FW300-N1B4

Annotation: Translation elongation factor Ts

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 TIGR00116: translation elongation factor Ts" amino acids 1 to 282 (282 residues), 312.7 bits, see alignment E=1.1e-97 PF00889: EF_TS" amino acids 71 to 265 (195 residues), 195.8 bits, see alignment E=3.2e-62

Best Hits

Swiss-Prot: 97% identical to EFTS_PSEFS: Elongation factor Ts (tsf) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K02357, elongation factor Ts (inferred from 97% identity to pfs:PFLU1271)

Predicted SEED Role

"Translation elongation factor Ts"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z991 at UniProt or InterPro

Protein Sequence (287 amino acids)

>Pf1N1B4_3085 Translation elongation factor Ts (Pseudomonas fluorescens FW300-N1B4)
MAEITAALVKELRERTGEGMMDCKKALTKAGGDIEKAIDDMRASGAIKAAKKAGNVAAEG
AIALKEDGKSAVLLEVNSQTDFLALQDDFKAFVASSVEKAFADKLTDVAPLIEAQEADRL
VLVGKVGENVNIRRLARVEGDVVGGYLHGNKIGVAVVLKGGNVELAKDIAMHVAATNPEF
LLPSEVSAEAVEREKGVFLTLNADKIAGKPENIVENMVKGRISKFLAEASLVEQAFVKNP
EIKVGELAKKAGAEIVSFTYFKVGEGIEKPVDNFAEEVAAQLAAAKQ