Protein Info for Pf1N1B4_3063 in Pseudomonas fluorescens FW300-N1B4

Annotation: RND efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 336 to 355 (20 residues), see Phobius details amino acids 362 to 382 (21 residues), see Phobius details amino acids 388 to 412 (25 residues), see Phobius details amino acids 428 to 451 (24 residues), see Phobius details amino acids 464 to 486 (23 residues), see Phobius details amino acids 533 to 552 (20 residues), see Phobius details amino acids 867 to 884 (18 residues), see Phobius details amino acids 891 to 911 (21 residues), see Phobius details amino acids 917 to 936 (20 residues), see Phobius details amino acids 965 to 985 (21 residues), see Phobius details amino acids 991 to 1015 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 6 to 1013 (1008 residues), 557.5 bits, see alignment E=5.4e-171 PF03176: MMPL" amino acids 845 to 1014 (170 residues), 28.9 bits, see alignment E=6e-11

Best Hits

KEGG orthology group: None (inferred from 73% identity to abo:ABO_2522)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z971 at UniProt or InterPro

Protein Sequence (1023 amino acids)

>Pf1N1B4_3063 RND efflux transporter (Pseudomonas fluorescens FW300-N1B4)
MGFNLSEWALRNRQIVLFLMLLLAVVGALSYTKLGQSEDPPFTFKAMVIRTNWPGATAEE
VSRQVTERIEKKLMETGEYDRIASFSRPGESQVTFIARDSMHSVEIPELWYQARKKISDI
RHTLPPGIQGPFFNDEFGTTFGNIYALTGEGFDYAVLKDYADRVQIQLQRVKDVGKVDLL
GLQDEKIWIELSNVKLATLGLPLATVQQALEEQNAMSNAGFFETTSERLQLRVSGNFQTV
DEIKNFPIRVGDRTFRIGDVANVRRGFNDPPAPRMRFMAEDAIGLAVAMKSGGDILILGK
ALEVEFARIQKNLPAGMQLRKVSDQPAAVKTGVGEFVQVLVEALAIVLLVSFFSLGVRTG
MVVALAIPLVLAMTFACMYYLGIGLHKISLGALVLALGLLVDDAIIAVEMMAIKMEQGFD
RVKAASYAWTSTAFPMLTGTLITAAGFLPIATAQSGTGEYTRSIFQVVTIALLASWVAAV
VFVPYLGEKLLPDLAKIHAAKHGTGDGQPDPYGTPFYQRVRRLVEWCVRRRKTVIVLTIV
MFVASVVLFRFVPQQFFPASGRLELMVDLKLAEGASLSNTADEVKRLEGLLKDHAGIDNY
VAYVGTGSPRFYLPLDQQLPAASFAQFVVLAKTIEDRETLRTWLIETLNEQFPALRSRVT
RLENGPPVGYPVQFRVTGEHIEEVRALARKVAAKVRENPHVANVHLDWEEPSKVVYLNVD
QDRARALGVSTTNLSGFLRSSLTGASVSQYREDNELIEILLRGTVHERTELALLPSLAVP
TDNGRSVALSQIATLEYGFEEGIIWHRNRLPNVTVRADIYGKEQPATLVQQIMPTLDPIR
AELPDGYLLDVGGTVEDSARGQNSVKAGVPLFIVVVLTLLMLQLRSFSRTVMVFLTAPLG
LIGVTLFLMVFRQPFGFVAMLGTIALSGMIMRNSVILVDQIEQDIAAGLKPWQAIIEATV
RRFRPIVLTALAAVLAMIPLSRSVFFGPMAVAIMGGLIVATALTLLFLPALYAAWFRVRK
ESV