Protein Info for Pf1N1B4_3048 in Pseudomonas fluorescens FW300-N1B4

Annotation: Outer membrane lipoprotein omp16 precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14346: DUF4398" amino acids 27 to 105 (79 residues), 48.2 bits, see alignment E=1.3e-16 PF00691: OmpA" amino acids 145 to 240 (96 residues), 82.5 bits, see alignment E=2.3e-27

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfo:Pfl01_1066)

Predicted SEED Role

"Outer membrane lipoprotein omp16 precursor" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166P3F1 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Pf1N1B4_3048 Outer membrane lipoprotein omp16 precursor (Pseudomonas fluorescens FW300-N1B4)
MRKQLMIPALLAASVALAACSTPPNANLEQARTNYTGLQANPQASKVAALETKDASEYLD
KADKAYLDREDQAKVDQLAYLTNQRVEVAKQTIALRTAENNLKNAAAQRAQARLDARDQQ
IKQLQDSLNAKQTDRGTLVTFGDVLFATNKADLKSNGLVNINKLAQFLQENPDRKVIVEG
YTDSTGSASYNQSLSERRATSVQVALIKMGVDPARIVAQGYGKEYPVAENSSVSGRAMNR
RVEVTISNDNQPVIPRSAISAK