Protein Info for Pf1N1B4_30 in Pseudomonas fluorescens FW300-N1B4

Annotation: Cation efflux system protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1028 signal peptide" amino acids 15 to 15 (1 residues), see Phobius details transmembrane" amino acids 16 to 33 (18 residues), see Phobius details amino acids 337 to 355 (19 residues), see Phobius details amino acids 362 to 382 (21 residues), see Phobius details amino acids 389 to 413 (25 residues), see Phobius details amino acids 428 to 452 (25 residues), see Phobius details amino acids 465 to 488 (24 residues), see Phobius details amino acids 526 to 546 (21 residues), see Phobius details amino acids 859 to 878 (20 residues), see Phobius details amino acids 884 to 906 (23 residues), see Phobius details amino acids 912 to 933 (22 residues), see Phobius details amino acids 961 to 981 (21 residues), see Phobius details amino acids 986 to 1010 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1009 (1003 residues), 486.4 bits, see alignment E=8.5e-150

Best Hits

KEGG orthology group: None (inferred from 81% identity to bug:BC1001_4646)

Predicted SEED Role

"Cation efflux system protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MDN0 at UniProt or InterPro

Protein Sequence (1028 amino acids)

>Pf1N1B4_30 Cation efflux system protein (Pseudomonas fluorescens FW300-N1B4)
MSGFNLSALAVRERSITLFLILLISVGGLYAFFKLGRAEDPAFTIKQMTVVTAWPGATAQ
EMQDQVVEKLEKRMQELRWYDRTETFTRPGLAFTTVYLLDSTPPSAVQEEFYQARKKILD
EQKGLPSGVIGPMVNDEYSDVTFALYALKAKGEPQRLLVREAESLRQRLLHVAGVKKVNI
IGEQAERIFVELSYERLATLGISARDIFSALNTQNMITPAGSVEAKGPQVFIRLDGAFDD
LQKIRNTPLTVQGRTLKLSDVAEVKRGYEDPATFLVRNNGEPALLLGVVMRDGWNGLDLG
KSLEAEATAINEQMPLGMSLTKVTDQAVNIGASVNEFMVKFFAALGVVLLVCFLSMGWRV
GVVVAAAVPLTLAAVFIVMAATGKDFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGY
DRIKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAKSTAGEYTANMFWIVGIALITSWVVA
VVFTPYLGVKLLPQIKVPEGGHTAIYGTPNYQRFRRLLGSVIRRKGLVAASVVGLFVVAI
LGMGVVKKQFFPTSDRPEVLVEVQMPYGTSIEQTDVAAAKVEAWLALQSEARIVTAYIGQ
GAPRFYLAMAPELPDPSFAKIVVLTTSQQEREALKLRLRQAVADGLAPEARVRVTQLVFG
PYSPYPVAFRVMGADPAVLRDIAAQVREVMTASPMMRTVNTDLGERAPALHLTLDQDRLQ
AFGLTSTDVAQQLQFLLTGVPVTEVREDIRSVQVVARSAGETRLDPSKIAAFTLTGAQGQ
RVSLSQVGAVDVRMEEPILRRRDRTPTITVRGDVAEGLQPPDVSNALITQLQPIIEKLPA
GYRIEFAGSIEESGKANKALLPLFPIMIALMLLTIIIQVRSMSAMMMVFATAPLGLIGVV
PILLLFQQPFGINALVGLIALSGILMRNTLILIGQIHSNEQAGLSPYNAVVEATVQRARP
VILTALAAMLAFIPLTHSVFWGTLAYTLIGGTFAGTVLTLVFLPAMYALWFKIKPEPAYE
LAANTHVA