Protein Info for Pf1N1B4_297 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG00809136: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 834 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 306 to 331 (26 residues), see Phobius details amino acids 351 to 377 (27 residues), see Phobius details amino acids 397 to 415 (19 residues), see Phobius details amino acids 421 to 444 (24 residues), see Phobius details amino acids 469 to 492 (24 residues), see Phobius details amino acids 711 to 731 (21 residues), see Phobius details amino acids 763 to 786 (24 residues), see Phobius details amino acids 798 to 818 (21 residues), see Phobius details PF02687: FtsX" amino acids 264 to 373 (110 residues), 37.5 bits, see alignment E=1.1e-13 amino acids 715 to 817 (103 residues), 29.3 bits, see alignment E=3.6e-11

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 92% identity to pfo:Pfl01_4016)

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BHJ1 at UniProt or InterPro

Protein Sequence (834 amino acids)

>Pf1N1B4_297 FIG00809136: hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
MARLPLLRLFSIALRQLWRDARAGELRVLFFALLVAVAASTAIGYFGARLNSAMMLRATE
FLGADLVLEGSSPARPEQIRSGTELGLEHAQVVEFSSVIATDNGIQLSSIKAADDVYPLR
GELKSAPAPFAPEEPGGGPKPGEAWVEARLLTALDLKIGDSIDVGMKTLTLARVLTYEPD
RAGNFYSLTPRVLINFSDLEATGVVQPGSRVSYRELWRGNASALETYRQLIKPGLAANQR
IQDARDGNRQIGGALGKAERYLNMASLVAVLLSGVAVALSATRFATRRFDASALLRCLGL
SRRETMVLFSLQLTVLGLLASVSGALLGWLAQLGLFALLRDLLPTDVPPGGLLPAIAGIG
TGLVALAGFALPPLAALGRVPPLRVLRRDMLPIPSSSWIVYGAALGALGLIMWRLSLDLL
LTFALLGGGVIAALVLGSVLLLLLKSLRRMLARAELPWRLGLGQLLRHPLAAAGQALAFG
LILLSMALIALLRGELLDTWQNQLPKNAPNYFALNILPADKQAFTDRLMELSAQSAPLYP
VVPGRLISVNGEPVQDIVSKDSAGDRAIQRDLSLTWAAELPEGNKLTAGNWWDQQPSDEI
PGVSVEGKVAESLKLKLGDHMVFTVGGVNREAKVTSLREVNWDNFQPNFFMIFQPGTLKD
LPATYLTSFYLAPGHDQQIVDLSRSFPAVTILQVEALLAQLRSILGQVTLAVEYVLLFVL
AAGMTVLFSGLQATLDERIRQGALLRALGAERQLLVRARRIEFGLLGAVSGLLAALGSEL
VSLVLYRYAFDLPWHPHPWLLVLPLIGAVLIGGAGVFGTRRALNASPLTVLREG