Protein Info for Pf1N1B4_2960 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG002188: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF07044: DUF1329" amino acids 84 to 449 (366 residues), 543.8 bits, see alignment E=1.2e-167

Best Hits

Swiss-Prot: 78% identical to Y3922_PSEAE: Uncharacterized protein PA3922 (PA3922) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: None (inferred from 92% identity to pba:PSEBR_a870)

Predicted SEED Role

"FIG002188: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z4L4 at UniProt or InterPro

Protein Sequence (454 amino acids)

>Pf1N1B4_2960 FIG002188: hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
MKITKSLFHVGVLGLSLLATGVMAAVPAAEADKLGKSLTPMGAEMAGNADGSIPAWKPMP
KNAGSVDSKGFLSDPFASEKPQFTITAQNVDQYKDKLAPGQYAMFKRYPETFKMPVYPSH
RGATVPDEVFASIKKNATNTNLVSGGNGLENFETAIPFPIPKSGVEVIWNHITRYRGGSV
TRLITQATPQPNGSFSLVYFEDQFVFRDKMKDYDPKNPGNILFYFKQKVTAPARLAGGVL
LVHETLDQVKEPRSAWVYNAGQRRVRRAPQVSYDGPGTAADGLRTSDNLDMYNGAPDRYD
WKLEGKKEMYIASDSYKLDSPQLKYADIIKAGHINQDLTRYELRRVWHVVATLKEGQRHI
YAKRDFYIDEDTWQAAVVDHYDGRGQLWRVAEAHSENYYDKQVPWYALETLYDLQSGRYL
ALGMKNEEKSAYNFGFTASTADFTPAALRQEGVR