Protein Info for Pf1N1B4_2910 in Pseudomonas fluorescens FW300-N1B4

Annotation: fosmidomycin resistance protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 405 transmembrane" amino acids 22 to 44 (23 residues), see Phobius details amino acids 55 to 79 (25 residues), see Phobius details amino acids 92 to 125 (34 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 180 to 198 (19 residues), see Phobius details amino acids 226 to 250 (25 residues), see Phobius details amino acids 266 to 285 (20 residues), see Phobius details amino acids 294 to 311 (18 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 349 to 370 (22 residues), see Phobius details amino acids 381 to 399 (19 residues), see Phobius details PF07690: MFS_1" amino acids 31 to 262 (232 residues), 80.6 bits, see alignment E=5.5e-27 amino acids 234 to 403 (170 residues), 55.8 bits, see alignment E=1.8e-19

Best Hits

Swiss-Prot: 60% identical to FSR_ECOLI: Fosmidomycin resistance protein (fsr) from Escherichia coli (strain K12)

KEGG orthology group: K08223, MFS transporter, FSR family, fosmidomycin resistance protein (inferred from 93% identity to pfo:Pfl01_4757)

MetaCyc: 60% identical to fosmidomycin efflux pump (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-41

Predicted SEED Role

"fosmidomycin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BNY1 at UniProt or InterPro

Protein Sequence (405 amino acids)

>Pf1N1B4_2910 fosmidomycin resistance protein (Pseudomonas fluorescens FW300-N1B4)
MAISNVQSAATSAPATSQSSPLVMRIIGAVALAHLINDLIQAVLPSIYPMLKASYGLTFT
QIGLITLTFQLTASLLQPWVGYHTDRHPKPWLLPAGTVCTLIGILMMSVVGSFPMILLAA
GLIGVGSSTFHPEASRVARLASGGRFGLAQSTFQVGGNAGSAFGPLLAAAIIIPYGQGHV
AWFGLFALFALFVLYRISRWYANHLNLFKLKQGQAATHGLSKQRVISALVVLGLLVFSKY
FYMASLTSYFTFYLIEKFDLSVASSQLHLFLFLGAVAAGTFFGGPIGDKIGRKAVIWFSI
LGVAPFTLLLPHVDLFWTSILSVVIGFILASAFSAIVVYAQELVPGNVGMIAGVFFGLMF
GFGGIGAALLGHLADIHGIEYVYFLCSFLPLLGVLAIFLPRTRKV