Protein Info for Pf1N1B4_2833 in Pseudomonas fluorescens FW300-N1B4

Annotation: Benzoate transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details amino acids 47 to 65 (19 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 170 to 187 (18 residues), see Phobius details amino acids 193 to 214 (22 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 248 to 278 (31 residues), see Phobius details amino acids 290 to 315 (26 residues), see Phobius details amino acids 321 to 344 (24 residues), see Phobius details amino acids 352 to 379 (28 residues), see Phobius details TIGR00843: benzoate transporter" amino acids 2 to 384 (383 residues), 450 bits, see alignment E=3.7e-139 PF03594: BenE" amino acids 6 to 383 (378 residues), 520.5 bits, see alignment E=1.3e-160

Best Hits

Swiss-Prot: 52% identical to BENE_ACIAD: Benzoate membrane transport protein (benE) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 75% identity to psa:PST_1675)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z4B3 at UniProt or InterPro

Protein Sequence (403 amino acids)

>Pf1N1B4_2833 Benzoate transport protein (Pseudomonas fluorescens FW300-N1B4)
MKALFQDFSLSAAVAGFIATVISYAGPLVIIFQAAETAHLSREVLSSWVWAISIGSAVLG
IGLSLRYRVPVIIAWSAPGSALLVALLPGISMPEAVGAYLVSSLIIFLVGVSGAFDRIIG
KLPAAIAAAMLAGILFSFGTGLFVSLQGKPLLVLAMFATYLICKRVMPRYAVLMVLLVGC
SMAFLAGDLHREALVIGLATPVWITPAFSLSAMLNVALPLVMVALTGQFVPGMAVLRASG
YPTPAGPIIASSALGTALLAPFGCHGLNLAAITAAICTGREAHEDPRKRYVAGVVGGLCY
LVLGIFGATLVSLFSAFPKELIAALAGLALFAAIAGALAGAMAVPSDREAALVTFLTTAS
GMSLFGLSAAFWGLIFGMVTHVLLSARRPAPAIQAAPAQEVAR