Protein Info for Pf1N1B4_2829 in Pseudomonas fluorescens FW300-N1B4

Annotation: Putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 transmembrane" amino acids 16 to 36 (21 residues), see Phobius details amino acids 42 to 60 (19 residues), see Phobius details amino acids 70 to 94 (25 residues), see Phobius details amino acids 162 to 185 (24 residues), see Phobius details amino acids 219 to 243 (25 residues), see Phobius details amino acids 248 to 276 (29 residues), see Phobius details amino acids 281 to 299 (19 residues), see Phobius details amino acids 318 to 343 (26 residues), see Phobius details PF01594: AI-2E_transport" amino acids 24 to 348 (325 residues), 117.3 bits, see alignment E=4.4e-38

Best Hits

KEGG orthology group: None (inferred from 69% identity to bph:Bphy_6456)

Predicted SEED Role

"Putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BNR7 at UniProt or InterPro

Protein Sequence (366 amino acids)

>Pf1N1B4_2829 Putative membrane protein (Pseudomonas fluorescens FW300-N1B4)
MVPIPMLEKVFSRDLLDVLIRAGVIAVLVMFCFQIFSPFLDLMLWSVILAITLYPLQVRF
KSKLGNKDGLTATLIVLVVISILMVPIYLLGASIADSVEKVMTMVKTDSFHIPPPSDAVA
SWPLVGEPIYNLWAQATTDLPDLAHKFMPQIKGVSLSLLSKLAGVGMGLLLFIVALIVAG
IFLAYGESGHRSAVQIVTRFSGPINGPKIADLCTATIRAVALGVVGIAFIQMLLVGIGFV
FMGVPGAGLLALAVLLLGIMQLPATLITLPVIVFVFMSEGASTATIVFAIYVFIAGLVDN
VLKPLLLGRGVDVPMPVVLIGALGGMVTGGILGLFIGPVILAVGYQLFWEWVDQAQEPGP
DNQGQT