Protein Info for Pf1N1B4_2807 in Pseudomonas fluorescens FW300-N1B4

Annotation: FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 PF00254: FKBP_C" amino acids 11 to 144 (134 residues), 60.8 bits, see alignment E=6.5e-21

Best Hits

Swiss-Prot: 93% identical to FKBX_PSEFL: Probable FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase (yaaD) from Pseudomonas fluorescens

KEGG orthology group: K03774, FKBP-type peptidyl-prolyl cis-trans isomerase SlpA [EC: 5.2.1.8] (inferred from 97% identity to pfo:Pfl01_4850)

MetaCyc: 41% identical to peptidyl-prolyl cis-trans isomerase FkpB (Escherichia coli K-12 substr. MG1655)
Peptidylprolyl isomerase. [EC: 5.2.1.8]

Predicted SEED Role

"FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8)" (EC 5.2.1.8)

Isozymes

Compare fitness of predicted isozymes for: 5.2.1.8

Use Curated BLAST to search for 5.2.1.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BNP6 at UniProt or InterPro

Protein Sequence (150 amino acids)

>Pf1N1B4_2807 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) (Pseudomonas fluorescens FW300-N1B4)
MTEQVLAEQRIGQNTEVTLHFALRLENGDTVDSTFDKAPATFKVGDGSLLPGFEAALFGF
KAGDKRTLTIEPENAFGQPNPQNVQIIPRSQFKDMELSPGLLVIFNDAANTELPGVVKEF
DDAQVTIDFNHPLAGKTLTFDVEIFNVKAL