Protein Info for Pf1N1B4_2803 in Pseudomonas fluorescens FW300-N1B4

Annotation: Proposed peptidoglycan lipid II flippase MurJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 47 (17 residues), see Phobius details amino acids 83 to 110 (28 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 161 to 182 (22 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details amino acids 236 to 262 (27 residues), see Phobius details amino acids 274 to 293 (20 residues), see Phobius details amino acids 312 to 333 (22 residues), see Phobius details amino acids 354 to 374 (21 residues), see Phobius details amino acids 383 to 402 (20 residues), see Phobius details amino acids 408 to 427 (20 residues), see Phobius details amino acids 448 to 466 (19 residues), see Phobius details amino acids 479 to 501 (23 residues), see Phobius details TIGR01695: murein biosynthesis integral membrane protein MurJ" amino acids 2 to 502 (501 residues), 536.8 bits, see alignment E=2.6e-165 PF03023: MurJ" amino acids 28 to 478 (451 residues), 516.8 bits, see alignment E=4.5e-159 PF14667: Polysacc_synt_C" amino acids 354 to 500 (147 residues), 48.4 bits, see alignment E=1.1e-16

Best Hits

Swiss-Prot: 73% identical to MURJ_SALTY: Probable lipid II flippase MurJ (murJ) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K03980, virulence factor (inferred from 94% identity to pba:PSEBR_a4859)

MetaCyc: 72% identical to lipid II flippase MurJ (Escherichia coli K-12 substr. MG1655)
TRANS-RXN0-286

Predicted SEED Role

"Proposed peptidoglycan lipid II flippase MurJ" in subsystem ZZ gjo need homes

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NYQ4 at UniProt or InterPro

Protein Sequence (512 amino acids)

>Pf1N1B4_2803 Proposed peptidoglycan lipid II flippase MurJ (Pseudomonas fluorescens FW300-N1B4)
MNLLKSLAAVSSITMVSRVLGFVRDTLIARAFGAGMATDAFFIAFKLPNLLRRIFAEGAF
SQAFVPILAEYKSQKGEEATRTFIAYVSGLLTLVLALVTALGMLAAPWVIWATAPGFVTT
PEKFELTTDLLRVTFPYILLISLSSLAGAILNTWNRFSVPAFVPTLLNVSMIVFAVFLTP
YFDPPVMALGWAVLVGGLAQLLFQLPHLKKIGMLVLPRLSLRDSGVWRVMKQMLPAIIGV
SVSQISLIINTIFASFLVAGSVSWMYYADRLMELPSGVLGVALGTILLPTLARTYASQDR
HEYSRILDWGLRLCFMLVLPCALALGILAEPLTVSLFQYGQFSAFDAAMTQRALTAYSVG
LLGIIVIKVLAPGFYAQQNIRTPVKIAIFTLIVTQLFNLVLIGPLAHAGLALAISAGACI
NAGLLFYQLRKQQMYQPQPGWAKFGLKLLVAVAVMSAVLLGAMHFMPAWAEGHMLERLLR
LGALVIAGVVVYFGMLLLMGFRLRDFNRKALN