Protein Info for Pf1N1B4_2788 in Pseudomonas fluorescens FW300-N1B4
Annotation: ATP-dependent protease La (EC 3.4.21.53) Type II
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.
Best Hits
Predicted SEED Role
"ATP-dependent protease La (EC 3.4.21.53) Type II" in subsystem Proteasome bacterial or Proteolysis in bacteria, ATP-dependent (EC 3.4.21.53)
Isozymes
Compare fitness of predicted isozymes for: 3.4.21.53
Use Curated BLAST to search for 3.4.21.53
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (147 amino acids)
>Pf1N1B4_2788 ATP-dependent protease La (EC 3.4.21.53) Type II (Pseudomonas fluorescens FW300-N1B4) LSKTPLKQCFAITGSINQFGEVQAVGGVNEKIEGFFRLCEARGLTGEQGAIIPQANVATL MLDEKVLAAVRAGQFHVYAVRQADEALSLLVGEPAGAPDENGAFPEGSINARVVERLRVI AEMISEEDLKEAEKELAQEAMLEIKPA