Protein Info for Pf1N1B4_2759 in Pseudomonas fluorescens FW300-N1B4

Annotation: MFS general substrate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 16 to 41 (26 residues), see Phobius details amino acids 47 to 68 (22 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 104 to 122 (19 residues), see Phobius details amino acids 129 to 131 (3 residues), see Phobius details amino acids 143 to 147 (5 residues), see Phobius details amino acids 165 to 165 (1 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 221 to 245 (25 residues), see Phobius details amino acids 257 to 278 (22 residues), see Phobius details amino acids 286 to 303 (18 residues), see Phobius details amino acids 308 to 331 (24 residues), see Phobius details amino acids 344 to 358 (15 residues), see Phobius details amino acids 369 to 393 (25 residues), see Phobius details PF05977: MFS_3" amino acids 12 to 388 (377 residues), 120.9 bits, see alignment E=5.7e-39 PF07690: MFS_1" amino acids 19 to 354 (336 residues), 112 bits, see alignment E=3.1e-36

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfo:Pfl01_4894)

Predicted SEED Role

"MFS general substrate transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NXN6 at UniProt or InterPro

Protein Sequence (412 amino acids)

>Pf1N1B4_2759 MFS general substrate transporter (Pseudomonas fluorescens FW300-N1B4)
MPSQAPLLLRHHRPFIAFWLARVFTTSGFQMLTVAIGWNLYQLTGNVLDLGLVGLVEFAP
RVLFMLHTGHVADRYDRRKVAAICQSLQALIALSLAIGSATDHVTREMIFILAFLLGAAR
SFEMPTTQALLPSIVPSALFPRAVAAAQSAQQSATIVAPALGGLLYAFGSVWVYGPTVIL
YLIACALMLNLPARQTPLNKGKATLDSLLAGIRFIRSRPDILGAISLDLFAVLLGGATAL
LPVFAKDILLTGPWGLGLLRSAPAVGALLMSLFLARFAVERNVGRVMFTAVGVFGVATIA
FGLSTSFWFSLAVLVVLGAADMISMVIRASFVQLETPDEMRGRVSAVNGLFIGASNQLGE
FESGLTAHWFGTVPAVVMGGIGTLMVTGAWIKLFPTLANRDRMHVPVEEVRV