Protein Info for Pf1N1B4_2686 in Pseudomonas fluorescens FW300-N1B4

Annotation: DedA protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 20 to 51 (32 residues), see Phobius details amino acids 62 to 80 (19 residues), see Phobius details amino acids 101 to 122 (22 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 176 to 196 (21 residues), see Phobius details amino acids 207 to 228 (22 residues), see Phobius details amino acids 251 to 276 (26 residues), see Phobius details amino acids 283 to 304 (22 residues), see Phobius details amino acids 323 to 340 (18 residues), see Phobius details amino acids 352 to 372 (21 residues), see Phobius details amino acids 378 to 397 (20 residues), see Phobius details amino acids 409 to 428 (20 residues), see Phobius details PF09335: VTT_dom" amino acids 39 to 163 (125 residues), 82.3 bits, see alignment E=4e-27 PF01569: PAP2" amino acids 284 to 400 (117 residues), 72.2 bits, see alignment E=3.5e-24

Best Hits

KEGG orthology group: None (inferred from 90% identity to pfo:Pfl01_4976)

Predicted SEED Role

"DedA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NVW9 at UniProt or InterPro

Protein Sequence (438 amino acids)

>Pf1N1B4_2686 DedA protein (Pseudomonas fluorescens FW300-N1B4)
MGPWLDSVTGWLTVNPQWLAAAVFIVACIECLAIAGLIVPGTVLLFAVAVLAGSGALSLG
ETLLLGFLGGVLGDIVSYFLGRHFHQNIRRLPGLRHHPEWMAGAEAYFQRYGIASLLVGR
FIGPLRPMLPMVAGMCDMPFPRFAVVSLLAAAGWSLAYLLPGWATGAAIRLPLPEGFWLE
AGIVAGSIAVMVGLSANSSLRRHRRATIWISSMSLLILIGLFIGYPHLTALDQGLMTLIQ
EHRSPALDEVAVVFTLIGEFRNMFMFSALLTVLLLLTRQWRHALFAGGTLLFTALGNTAT
KHFFARVRPEVLSDPLTSYSMPSGHASGSFALFLTLAVLAGRGQPPRMRLTWLLLGCLPA
LTIALSRVYLGAHWPTDILAGAMLAACVCAASLWLSQRRTPLNAMPPKIWWLVLPAMVAL
FGFFALRHLPHAMLRYAY