Protein Info for Pf1N1B4_2634 in Pseudomonas fluorescens FW300-N1B4

Annotation: Lhr-like helicases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 PF00270: DEAD" amino acids 3 to 178 (176 residues), 83.3 bits, see alignment E=4.3e-27 PF04851: ResIII" amino acids 4 to 177 (174 residues), 33.7 bits, see alignment E=8.8e-12 PF00271: Helicase_C" amino acids 235 to 333 (99 residues), 64.7 bits, see alignment 2.2e-21 PF08494: DEAD_assoc" amino acids 598 to 800 (203 residues), 166.4 bits, see alignment E=1.8e-52

Best Hits

Predicted SEED Role

"Lhr-like helicases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NUT3 at UniProt or InterPro

Protein Sequence (1400 amino acids)

>Pf1N1B4_2634 Lhr-like helicases (Pseudomonas fluorescens FW300-N1B4)
LIRQRRSTLIAAPTGSGKTLTAFLAVLDDLVHRGLESPDGLPDETLVVYVSPLKALSNDI
RINLQNPLAGITEQLRVMGLPDVPISTAVRTGDTPQKERSAMRKTAPHILVTTPESLYVL
LGSDSGRQMLGTTHTVIVDEIHAIAASKRGSHLALSLERLQALCSQPLVRIGLSATQKPI
EAVSRFLVGRDRDCEIIDIGHARPRDLDIEVPPVPLSAVMANDIWELVYDRLAALAREHR
TTLIFVNTRRLAERLSRHLSERLGKEAVAAHHGSLAKEFRLDAEQRLKRGELQVLIATAS
LELGIDIGDVDLVCQIASPRSIAGFLQRVGRSGHQVGGTPKGRLFATTRDDLIECAALLD
CVRRGELDTLLIPEAPLDVLAQQIIAEVSCQEWQEQALLEMLRKASPYAALDEKHYQALL
QMLAEGYNGRLGVRSAYLHRDAVSRTLRGRRGAKLTAVTSGGTIPDNADYSVLLEPQGLN
IGSVNEDFAVESIAGDIFQLGNTSYRILRVETGKVRVEDAQGQPPTIPFWLGEAPGRSDE
LSFAVARLQAQLDERLGATPGNLQPAVDWLTDVLGLNLASAEQLVDYLARARLTLGALPS
QDTLLMERFFDESGGTQLIIHSPFGSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLS
LSTGHSFELEDVWRYLHSNSAEHILTQAVLEAPLFGVRWRWNAGVALALPRYSGGRKVPP
QIQRMKSEDLIASVFPDQIACVENLAGEREIPDHPLVEQTLDDCLHEAMDSEGWLALLRR
MEQGDIRLISRDLPAPSPLAAEILSARPYTFLDDAPLEERRTQAVLNRRWSDPQSTDDLG
ALDADAITAVRDEAWPTPTSVDEMHEALMSLACIADAEAHANPNWLDWLNTLADSGRASR
LQINAEQSLWLALERLTCLRAIYPQATLVPPLEALPGFDETWEPDEAVLEVIRARLSAFG
PLPLKAIAEPLGLPPTQVTQALAQLEREGYVLRGQFTPGTREEEWCERHLLARIHRYTVK
RLRREIEPVALQDFMRFLFDWQHLSAASQGQGRAVLPAIISQFEGYPAAASAWDSDILPA
RLKDYSASWLDELCRSGKLVWTRLTTRNKSTSTALRSTPILLLPRSQVGLWSGLTEQTPV
SELSPKTQKVHEALSQHGALFFDELIHEAHLLRSELEIALQELVGAGLVNADSFAGLRAL
ITPASKRQNRSSRRGRGAFSGGMDDAGRWALLRRGAVAPIVDKQRPAPTPSDTLEHIAMT
LLRRYGVVFWRLLEREADWLPSWRELLRTFHRLEARGEIRGGRFVSGLAGEQFALPEAIP
LLREVRRRPHDGSLIAVCGVDPLNLAGTLLPGAKVPALASNRLVYRDGIPAAAEIAGKQQ
FWLELDQQASGEVRSKLIRH