Protein Info for Pf1N1B4_2620 in Pseudomonas fluorescens FW300-N1B4

Annotation: GlpG protein (membrane protein of glp regulon)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 55 to 76 (22 residues), see Phobius details amino acids 82 to 103 (22 residues), see Phobius details amino acids 107 to 126 (20 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details PF01694: Rhomboid" amino acids 44 to 176 (133 residues), 82.1 bits, see alignment E=2.4e-27

Best Hits

KEGG orthology group: None (inferred from 50% identity to psp:PSPPH_3592)

Predicted SEED Role

"GlpG protein (membrane protein of glp regulon)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NUL0 at UniProt or InterPro

Protein Sequence (187 amino acids)

>Pf1N1B4_2620 GlpG protein (membrane protein of glp regulon) (Pseudomonas fluorescens FW300-N1B4)
MDALKGFKTIAGVALFMVALQLLNVATGYSLIAFGLVPRTWQGLVGIITSPFLHGSFAHL
STNLIAFLILGTLVIVEGLSRFMAVSAIIILLGGSLVWLFGFAGVHIGASGWVFGLWAYL
LSRAWFQRSWSNLITASVVVLLYGGLIFGFLPRQGMSFEGHIFGAIAGFIAAKVLLSTPR
SRFNATR