Protein Info for Pf1N1B4_2580 in Pseudomonas fluorescens FW300-N1B4

Annotation: Translation elongation factor Tu

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 397 TIGR00485: translation elongation factor Tu" amino acids 2 to 397 (396 residues), 728 bits, see alignment E=2.2e-223 PF00009: GTP_EFTU" amino acids 11 to 204 (194 residues), 207 bits, see alignment E=3.1e-65 TIGR00231: small GTP-binding protein domain" amino acids 13 to 146 (134 residues), 50 bits, see alignment E=2.9e-17 PF03144: GTP_EFTU_D2" amino acids 228 to 296 (69 residues), 63.8 bits, see alignment E=2.5e-21 PF03143: GTP_EFTU_D3" amino acids 301 to 395 (95 residues), 138.4 bits, see alignment E=1.6e-44

Best Hits

Swiss-Prot: 98% identical to EFTU_PSEFS: Elongation factor Tu (tuf) from Pseudomonas fluorescens (strain SBW25)

KEGG orthology group: K02358, elongation factor Tu (inferred from 98% identity to pba:PSEBR_a5092)

Predicted SEED Role

"Translation elongation factor Tu" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NTQ3 at UniProt or InterPro

Protein Sequence (397 amino acids)

>Pf1N1B4_2580 Translation elongation factor Tu (Pseudomonas fluorescens FW300-N1B4)
VAKEKFDRTLPHVNVGTIGHVDHGKTTLTAALTRVCSEVFGSAVVAFDKIDSAPEEKARG
ITINTAHVEYNSLIRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHI
LLSRQVGVPYIVVFLNKADMVDDAELLELVEMEVRDLLSTYDFPGDDTPIIIGSALMALN
GQDDNEMGTTAVRKLVETLDSYIPDPVRVIDKPFLMPIEDVFSISGRGTVVTGRIERGIV
KVQDPLEIVGLRDTTVTTCTGVEMFRKLLDEGRAGENCGVLLRGTKRDDVERGQVLVKPG
SVKPHTKFEAEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNCELPEGVEMVMPGDNI
KMVVTLIKTIAMEDGLRFAIREGGRTVGAGVVAKIIE