Protein Info for Pf1N1B4_2496 in Pseudomonas fluorescens FW300-N1B4

Annotation: Acyl-CoA dehydrogenase (EC 1.3.8.7)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 592 PF12418: AcylCoA_DH_N" amino acids 3 to 33 (31 residues), 44.8 bits, see alignment (E = 3e-15) PF02771: Acyl-CoA_dh_N" amino acids 38 to 158 (121 residues), 42.5 bits, see alignment E=2.3e-14 PF02770: Acyl-CoA_dh_M" amino acids 163 to 273 (111 residues), 45.4 bits, see alignment E=2.3e-15 PF00441: Acyl-CoA_dh_1" amino acids 283 to 451 (169 residues), 73.2 bits, see alignment E=8.1e-24 PF22924: ACOX_C_alpha1" amino acids 293 to 447 (155 residues), 30.1 bits, see alignment E=1.2e-10 PF12806: Acyl-CoA_dh_C" amino acids 468 to 587 (120 residues), 122.4 bits, see alignment E=3.9e-39

Best Hits

KEGG orthology group: K00257, [EC: 1.3.99.-] (inferred from 98% identity to pfo:Pfl01_5166)

Predicted SEED Role

"Acyl-CoA dehydrogenase (EC 1.3.8.7)" (EC 1.3.8.7)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.3.8.7, 1.3.99.-

Use Curated BLAST to search for 1.3.8.7 or 1.3.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z3F2 at UniProt or InterPro

Protein Sequence (592 amino acids)

>Pf1N1B4_2496 Acyl-CoA dehydrogenase (EC 1.3.8.7) (Pseudomonas fluorescens FW300-N1B4)
MADYKAPLRDMRFVLNEVFEVAKLWAELPALAETVDAETVEAILEEAGKVTSKSIAPLSR
AADEEGCHWADGAVTTPAGFPQAYQTYAEGGWVGVGGDPTYGGMGMPKAVSAQVEEMVNS
ASLSFGLYPMLTAGACLSINAHASEELKAAYLPNMYAGVWAGSMCLTEPHAGTDLGIIRT
KAEPQADGSYKVSGTKIFITGGEHDLTENIIHLVLAKLPDAPAGPKGISLFLVPKFMVNA
DGSLGARNPANCGSIEHKMGIQASATCVMNFDEAVGYLVGEPNKGLAAMFTMMNYERLGV
GIQGLATGERSYQNAIEYARDRLQSRSPTGAQNKDKVADPIIVHPDVRRMLLTMKASNEG
GRAFSTYVAMQLDTAKFSEDATTRKRAEDLVALLTPVAKAFLTDLGLETTVHGQQVFGGH
GYIREWGQEQLVRDVRITQIYEGTNGIQALDLVGRKIVGSGGAFYTLFADEIRHFTATAN
ADLAEFTQPLNDAVDTLDELTAWLLDRAKNNPNEIGAASVEYLQAFGYMAYAYMWALMAK
AAFGKEAQDDFYASKLGTARFYFARLLPRIHSLSASVKAGSESLFLLDAGQF