Protein Info for Pf1N1B4_2464 in Pseudomonas fluorescens FW300-N1B4

Annotation: Ribosomal protein S6 glutaminyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF05618: Zn_protease" amino acids 23 to 166 (144 residues), 147.8 bits, see alignment E=9.9e-48

Best Hits

KEGG orthology group: None (inferred from 95% identity to pba:PSEBR_a5203)

Predicted SEED Role

"Ribosomal protein S6 glutaminyl transferase" in subsystem Ribosome biogenesis bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NRD9 at UniProt or InterPro

Protein Sequence (168 amino acids)

>Pf1N1B4_2464 Ribosomal protein S6 glutaminyl transferase (Pseudomonas fluorescens FW300-N1B4)
VKSLLALLSLVALPVLAAEPTLYGRYEYIALPEIGGEVLKAKMDTGALTASLSAKDIETF
TRDGDEWVRFRLATKGASNKVYEHKVARISKIKTRSEEDDDDKEAIEPTKRPVVDLELCL
GNVKRTVEVNLTDRSSFNYPLLIGAKALREFGAAVNPARRFTADKPDC