Protein Info for Pf1N1B4_2444 in Pseudomonas fluorescens FW300-N1B4

Annotation: Cholesterol oxidase (EC 1.1.3.6)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1152 PF00890: FAD_binding_2" amino acids 16 to 48 (33 residues), 20.9 bits, see alignment (E = 5.8e-08) PF00732: GMC_oxred_N" amino acids 85 to 309 (225 residues), 45 bits, see alignment E=3.6e-15 PF05199: GMC_oxred_C" amino acids 485 to 555 (71 residues), 50.8 bits, see alignment 7.8e-17

Best Hits

KEGG orthology group: K03333, cholesterol oxidase [EC: 1.1.3.6] (inferred from 90% identity to pfo:Pfl01_5219)

Predicted SEED Role

No annotation

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.1.3.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NR35 at UniProt or InterPro

Protein Sequence (1152 amino acids)

>Pf1N1B4_2444 Cholesterol oxidase (EC 1.1.3.6) (Pseudomonas fluorescens FW300-N1B4)
MTRIATPISDIKEHYDVIVIGSGYGGGIAASRLSRAGKRVCLLERGREIQPGEYPNTMLA
ATEELQVHDPDGHIGSRTGLFDLHVNAQQNVVVGCGLGGTSLINANVALEPEPGVFDDPR
WPLAVREHRDTLLKDGYARAREMLKPNPYPKTAPTLPKLEANQKSADYLKQGAHFYKPPI
NVTFDKLPNNLNHVGVEQLPCNHCGDCVSGCNNKAKNTTLMNYLPDAWNHGAEIFCQAEV
RHLERDADGDGWIVHFQYLDSGREKFSAPTLFVKADIVVVSAGTLGSTEILLRSRDKGLS
TSNQLGENMSGNGDILGFGHNCDQAINGIGFGAHPASEMKPVGPCITSIIDMRTEGDWRS
RMVIEEGSIPGALGRPMVPSMAAFAGLIGKPTDDSFTGKLKYAEREAESFLRGPYHGALH
NMQTYLIMSHDDGKGRMVLDSKDQLRIDWPGVGEQENVKLGNERLHQSTKALGGIWVENP
IWTELLKHSIVSVHPLGGCVMGEDAEQGVVNHKGQVFSSASGTNVYAGLYVADGAVIPTS
LAVNPLLTISAVSERNMGLLAADRGWHIDYTLPSAPRKQVAPPTLGVQFTETMKGYFSKD
FTQPQGTDLKLYEAAAKRGESENSPIEFTLTITANDLNRMIKEPEHAATLVGTLNAPGLS
PEPLTASNGVFNLFEEYQEQVGVRHMNYDMKLTAEDGSDYYFSAFKTVPEDNGVLNVWHD
TSTLYVTLYRGPDKTGEVLGSGVMHIHPADFAKQMTTMKVLNARNERERIDGLARFGKFF
AGILWESYGGVFAGDIYFNPDAPPRQKRPLDAPIPSVQFFQTEDNVQLRLTRYQGGSKGP
VMLVHGLGVGSNIFSTDTIQTNLLEFLCKHEYDVWLLDFRVSILIPASKHEWNGDQIAQY
DFKAAIAQIQQATKAADVQCVVHCYGATTFFMSLLAGLQGVRSVVCSQIAADTVVATATG
LKAGLHLPGMLDAIGIKSLTAYADNKESWFNKLYDKALNVYARIEAQGYCTNPVCHRITF
MYASLYRHDTLNETLHDNLHELFGESNMQTFEHLALILRKGHLVDFKGQDVYMPHFDRLT
MPICFISGEDNQCYLPESTLKTYERVCKAHGPERYSRHVVPGYGHIDCMFGKNAVVDVYP
IILQHLEKTALG