Protein Info for Pf1N1B4_2410 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG00956403: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 727 transmembrane" amino acids 21 to 38 (18 residues), see Phobius details amino acids 44 to 60 (17 residues), see Phobius details amino acids 68 to 85 (18 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details amino acids 422 to 439 (18 residues), see Phobius details amino acids 445 to 463 (19 residues), see Phobius details amino acids 469 to 485 (17 residues), see Phobius details amino acids 492 to 510 (19 residues), see Phobius details amino acids 516 to 538 (23 residues), see Phobius details TIGR01667: integral membrane protein, YccS/YhfK family" amino acids 12 to 719 (708 residues), 926.8 bits, see alignment E=7.6e-283 TIGR01666: TIGR01666 family membrane protein" amino acids 14 to 717 (704 residues), 766.2 bits, see alignment E=3e-234 PF12805: FUSC-like" amino acids 71 to 355 (285 residues), 365.6 bits, see alignment E=2.2e-113 PF04632: FUSC" amino acids 400 to 697 (298 residues), 41.4 bits, see alignment E=1.2e-14 PF13515: FUSC_2" amino acids 412 to 530 (119 residues), 85.4 bits, see alignment E=5.3e-28

Best Hits

KEGG orthology group: None (inferred from 96% identity to pfo:Pfl01_5250)

Predicted SEED Role

"FIG00956403: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NQG2 at UniProt or InterPro

Protein Sequence (727 amino acids)

>Pf1N1B4_2410 FIG00956403: hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
MSSTTFRQSLRRLWALDKFSYSVRVFIALTGTMALCWYQDEMGLLIPLFLGIIASALAET
DDSWQGRLNALAVTLVCFMVAALSVELLFPYPVLFIIAFALASFCLTMLGALGERYGAIA
SATLILSVYTMIGVDQRGGAVTDFWHEPVLLVAGAAWYGLLSVLWQALFSNQPVQQSLAR
LFRELGYYLKLKSSLFEPIRQMDVQAQRLELAQQNGRVVAALNAAKEIILHRVGDGRPGV
KVSRYLKLYFLAQDIHERASSSHYPYNALAEAFFHSDVLFRCQRLLRQQGKACRALAESI
QMRQPFTYDASFAEALNDLHASLEHLRIQSNPAWRGLLRSLRALAANLGTLDRLLSDASN
PDALADATDSSLLDRSPRSLKDVWVRLRTQLTPTSLLFRHALRLPLALSIGYGMVHLIHP
SQGYWIILTTLFVCQPNYGATRRKLGQRIIGTAIGLTVAWALFDLFPNPLVQSCFAILAG
VVFFTNRTTRYTLATAAITLMVLFCFNQVGDGYGLLLPRLFDTLLGSLIAGLAVFLFLPD
WQGRRLNKVLANTLTCNSIYLRQIMQQYAAGKSDDLAYRLARRNAHNADAALSTTLANML
MEPGHFRKEADVGFRFLVLSHTLLSYLSGLGAHRETQLPTEVREHLIDGAGVSLAASLDE
IAQGLASKQPIAIQSDEEEALANGLEQMPDEIDEGQRLVQTQLALICRQLGPLRTLAAHL
IKDTSEA