Protein Info for Pf1N1B4_2381 in Pseudomonas fluorescens FW300-N1B4

Annotation: Protein yceI precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF04264: YceI" amino acids 25 to 192 (168 residues), 141.7 bits, see alignment E=1.2e-45

Best Hits

Swiss-Prot: 84% identical to Y5802_PSEF5: UPF0312 protein PFL_5802 (PFL_5802) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)

KEGG orthology group: None (inferred from 93% identity to pfo:Pfl01_5284)

Predicted SEED Role

"Protein yceI precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BMJ1 at UniProt or InterPro

Protein Sequence (197 amino acids)

>Pf1N1B4_2381 Protein yceI precursor (Pseudomonas fluorescens FW300-N1B4)
MLKKTLAALAIGSALLSANVMAADYVVDKEGQHAFVDFKISHLGYSYITGTFKDIDGKFS
FDAAKPEDSKIEFNVRTASVFTNHAERDKHISSGDFLNVGKFADAKFVSTSVKSTGKNAA
GKDTADVTGNLTLLGVTKPIVVKATFLGEGKDPWGGYRAGFEGTTSIKRSDFGKQKDLGP
ASDAVELYITFEGVKAK