Protein Info for Pf1N1B4_2287 in Pseudomonas fluorescens FW300-N1B4

Annotation: Protein of unknown function DUF81

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 266 transmembrane" amino acids 12 to 40 (29 residues), see Phobius details amino acids 51 to 72 (22 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 113 to 131 (19 residues), see Phobius details amino acids 149 to 171 (23 residues), see Phobius details amino acids 182 to 205 (24 residues), see Phobius details amino acids 217 to 236 (20 residues), see Phobius details amino acids 248 to 265 (18 residues), see Phobius details PF01925: TauE" amino acids 13 to 263 (251 residues), 193.4 bits, see alignment E=2.6e-61

Best Hits

KEGG orthology group: None (inferred from 95% identity to pfo:Pfl01_5375)

Predicted SEED Role

"Protein of unknown function DUF81" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BMA4 at UniProt or InterPro

Protein Sequence (266 amino acids)

>Pf1N1B4_2287 Protein of unknown function DUF81 (Pseudomonas fluorescens FW300-N1B4)
MLGDAAMEFLLYLALGACAGVLAGLFGVGGGIIIVPVLVFSFTLQGFDASILTHLAVGTS
LATIIFTSVNAVREHHRRGAVRWPIFAWMTLGILIGAGFGALTAEAISGPNLQKIIGVFA
LIIAVQLALDFKPKASRTVPGKVGLTVAGSVIGWASAIFGIGGGSLTVPFLTWRSVPMQQ
AVATSSACGLPIALASALSFMILGWHDPLLPAHSLGFVYLPALLGIALTSMVFARLGARL
AHRLSPRLLKRLFAVLLFCVGLSFLL