Protein Info for Pf1N1B4_2271 in Pseudomonas fluorescens FW300-N1B4

Annotation: ATPases of the AAA+ class

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 141 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF14347: DUF4399" amino acids 50 to 141 (92 residues), 124.6 bits, see alignment E=8.7e-41

Best Hits

KEGG orthology group: None (inferred from 87% identity to pba:PSEBR_a256)

Predicted SEED Role

"ATPases of the AAA+ class"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NN20 at UniProt or InterPro

Protein Sequence (141 amino acids)

>Pf1N1B4_2271 ATPases of the AAA+ class (Pseudomonas fluorescens FW300-N1B4)
MKSFMSRAALAGLLLGASMLATAATPAPKGAEVFIVSPADGATVPQTVVVKFAVENIALA
PAGDVTKNTGHHHLLIDVDKLPAAGAPIPNDANHLHFGKAQTQAEVKLAPGKHTLQLELG
DSGHMPFDPPIVSEKITVNVK