Protein Info for Pf1N1B4_2159 in Pseudomonas fluorescens FW300-N1B4

Annotation: Benzoate transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 18 to 41 (24 residues), see Phobius details amino acids 53 to 72 (20 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 128 to 169 (42 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 256 to 282 (27 residues), see Phobius details amino acids 296 to 321 (26 residues), see Phobius details amino acids 327 to 349 (23 residues), see Phobius details amino acids 358 to 389 (32 residues), see Phobius details TIGR00843: benzoate transporter" amino acids 19 to 390 (372 residues), 381.8 bits, see alignment E=1.8e-118 PF03594: BenE" amino acids 19 to 389 (371 residues), 425.4 bits, see alignment E=9.4e-132

Best Hits

Swiss-Prot: 42% identical to BENE_ACIAD: Benzoate membrane transport protein (benE) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 83% identity to dac:Daci_3710)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BLY8 at UniProt or InterPro

Protein Sequence (416 amino acids)

>Pf1N1B4_2159 Benzoate transport protein (Pseudomonas fluorescens FW300-N1B4)
VSSSASPSPLRLRDLLHPIVAGLISVIVNYGGTFILVFQAAKVAGLSPEMTASWVWSVSI
GVGITGLFLSWVSREPIITAWSTPAAAFLVVALSTTPYAEAVGAYIISAAAFVLLGLSGC
FEKVIRLIPPGVAAGLLAGILLQFGIGAFGGMSLDPVLVGLLIAAYVLLKRFTARYAVVG
ILVLGLAFLLTQGRVELSGLALQFAAPVFTQPEFSINALLSVALPLFLITLTGQYMPGML
VLRNDGFSTSANPILTVTGLGSLLMAPFGSHAFNVAAITAAICTGKEASEDPSKRWVAGV
AAGLFYILVGIFGVTLAAVFMAFPPTFITTLAGLALLGTIGASLASAMADVKTREASLIT
FLACAANITLLGIGGAFWGLLIGLAAYALLNGRLPRREAVVIPAADAVVTTKGATH