Protein Info for Pf1N1B4_2092 in Pseudomonas fluorescens FW300-N1B4

Annotation: Type VI secretion lipoprotein/VasD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 166 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details TIGR03352: type VI secretion lipoprotein, VC_A0113 family" amino acids 11 to 154 (144 residues), 159.6 bits, see alignment E=2.1e-51 PF12790: T6SS-SciN" amino acids 34 to 150 (117 residues), 132.3 bits, see alignment E=3.8e-43

Best Hits

KEGG orthology group: K11906, type VI secretion system protein VasD (inferred from 90% identity to pfo:Pfl01_5580)

Predicted SEED Role

"Type VI secretion lipoprotein/VasD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NJV1 at UniProt or InterPro

Protein Sequence (166 amino acids)

>Pf1N1B4_2092 Type VI secretion lipoprotein/VasD (Pseudomonas fluorescens FW300-N1B4)
MSRCSTAFFKTLTALIALVLLAGCSSLSPYSKVTKVNLKLTGSDQLNPDLNGRPSPIVVR
LFELKHPVTFENADFFSLYERAKESLVPDLVASEELELRPGETVELKLSVEEGSRYVGVL
AAYRDLPETKWRYTVQITALEVTVADLTLDQAGIRNTHETLAKADD