Protein Info for Pf1N1B4_207 in Pseudomonas fluorescens FW300-N1B4

Annotation: Sensor histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 441 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 147 to 172 (26 residues), see Phobius details PF08521: 2CSK_N" amino acids 17 to 145 (129 residues), 32.1 bits, see alignment E=2.3e-11 PF00512: HisKA" amino acids 227 to 287 (61 residues), 43.7 bits, see alignment E=4.8e-15 PF02518: HATPase_c" amino acids 342 to 439 (98 residues), 78.9 bits, see alignment E=8e-26 PF13581: HATPase_c_2" amino acids 343 to 435 (93 residues), 28.4 bits, see alignment E=2.8e-10

Best Hits

KEGG orthology group: None (inferred from 92% identity to pfo:Pfl01_3934)

Predicted SEED Role

"Sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162AQA6 at UniProt or InterPro

Protein Sequence (441 amino acids)

>Pf1N1B4_207 Sensor histidine kinase (Pseudomonas fluorescens FW300-N1B4)
VMSLRLRLSLTLGAAFALIWALAAAWMLSDLRNQMMFSLDQRLVASARMVAGLLEQLPAL
PSKGEGTHFSAEQLSIPGGMACQVSSLRGEILARSHSSPEQTLEAEKMGFHDQMIDGAPW
RSFTLARGDVRITTADRQIEREALNMSILLAASVPVGVALLGCLCLLWLGIGQGLAPLNR
MRDALMRRSADSLEPLQIQPLPSELQPLLETQNQLFLRIGKTIERERRLTGDAAHELRSP
LTAIKTHLQVARMTEGSARDQSLARAEEGADRLHRTLEQLLLLARVEGSLSFDDGVQCSA
EQVAKLAIQDAASGDRQRIKFQLPTTFSDAPLQMPAVLSIAALRNLLDNALRHTPGNGAV
ELSLETTNNRVRFLVRDHGPGIAEDDLQHLTQRFWRNGQSTGCGLGLAIVQAIVQRCGCT
LHFDSRPDGLRVELTMPLQPV