Protein Info for Pf1N1B4_2058 in Pseudomonas fluorescens FW300-N1B4

Annotation: Protein ImpG/VasA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 619 PF05947: T6SS_TssF" amino acids 1 to 616 (616 residues), 780.6 bits, see alignment E=5.8e-239 TIGR03359: type VI secretion protein, TIGR03359 family" amino acids 5 to 618 (614 residues), 671.6 bits, see alignment E=6.9e-206

Best Hits

KEGG orthology group: K11896, type VI secretion system protein ImpG (inferred from 97% identity to pba:PSEBR_a5564)

Predicted SEED Role

"Protein ImpG/VasA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NIZ3 at UniProt or InterPro

Protein Sequence (619 amino acids)

>Pf1N1B4_2058 Protein ImpG/VasA (Pseudomonas fluorescens FW300-N1B4)
MNPRLLELYNQELHHVRESAAEFAQEYPKIASRLTLSGMDCADPYVERLLEGFAYLTARV
QLKLDAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLQADPDEGSLSSGFPLPRDTVLRAAL
GRETQTCCEYRTAHAVTLWPLQVSQAEYFGNPSAMLGRLAASEPKAKAGLRLTLRTGAEL
PFNSLALDNLPLYLNGADEQPFRLYEQLLGNVCAVFARQPGADWVERLPQDALRSQGFDD
TDAALPVVSRAFQGYRLLQEYFALPHRFLFVDFTQLSRAVKRCDGQELELIVLFDRHDPS
LEGSVGAAQFLPFCTPAINLFPKRLDRIHLSERVNEHHVIADRTRPMDFEIHSLTTLTGH
GTGSEQPFLPFYAVRDPSRYGRDQAWYTVRREPRVLSSGQRRNGPRSTYIGSETFVSLVD
SQQAPYRHDLRQLGVTALCTNRDLPLFMSVGNSKTDFTLADSAPVAAVRCVAGPSRPRAS
HAHDAKAWRLISQLSLNYLSLSEQGQGAAALRELLRLYGDSNDAALQLQIEGLREVSSKA
CTRRLPMPGPIVFGRGLEITLEFDENAFRGTGVFLLGAVFERFLARYVSINSFTETVIRT
TERGEIMRWKAKPGRRPTL