Protein Info for Pf1N1B4_2024 in Pseudomonas fluorescens FW300-N1B4

Annotation: sodium/alanine transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 483 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 59 to 83 (25 residues), see Phobius details amino acids 89 to 109 (21 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details amino acids 234 to 256 (23 residues), see Phobius details amino acids 294 to 315 (22 residues), see Phobius details amino acids 339 to 360 (22 residues), see Phobius details amino acids 377 to 393 (17 residues), see Phobius details amino acids 399 to 422 (24 residues), see Phobius details TIGR00835: amino acid carrier protein" amino acids 13 to 432 (420 residues), 470.4 bits, see alignment E=2.6e-145 PF01235: Na_Ala_symp" amino acids 49 to 445 (397 residues), 510.6 bits, see alignment E=1.9e-157

Best Hits

Swiss-Prot: 48% identical to GLNT_BACSU: Probable sodium/glutamine symporter GlnT (glnT) from Bacillus subtilis (strain 168)

KEGG orthology group: K03310, alanine or glycine:cation symporter, AGCS family (inferred from 94% identity to pba:PSEBR_a108)

Predicted SEED Role

"sodium/alanine transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z276 at UniProt or InterPro

Protein Sequence (483 amino acids)

>Pf1N1B4_2024 sodium/alanine transporter (Pseudomonas fluorescens FW300-N1B4)
MLEVINDFLSGKVLIVLIVGLGSYFTIRSRFVQFRHFFHMFAVFRDSLRSSAGQLSSFQA
LMLSLAGRVGAGNIAGVGIAVTLGGPGAVFWMWVTALVGMSSSFFECSLGQLYKRCDSEG
QFRGGPSFYIQHGLQKRWLGMIMAFLLLITFGFAFNGLQAHAVTHSLNNAFGLDTTYTGL
GLAVLLGLVFIGGIKRIAKVADLLVPVKTLVYIGVTIYVIVLQFDHVPGMLMTIVKSAFG
LDQAFGGLIGSAIVMGVKRGVFANEAGLGSAPNVAAVASVEHPVSQGVVQAFSVFLDTFV
ICTCTALLILLSGFYTPGFEGDGIALTQNSLAAVVGDWGRMFISVALALFVFTSILYNYY
LGENNLRFMVGENRKALIGYRALVLVLIFWGAIENLGTVFAFADITMTMLAFVNLIALFL
LFKVGMRILRDYDDQRAAGIKTPVFDSSKFPDLDLDLKAWPANPPAAAPTAAAEPQGVTA
AQR