Protein Info for Pf1N1B4_1962 in Pseudomonas fluorescens FW300-N1B4

Annotation: Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 PF00005: ABC_tran" amino acids 36 to 168 (133 residues), 80.9 bits, see alignment E=1.4e-26 PF14524: Wzt_C" amino acids 255 to 393 (139 residues), 119.9 bits, see alignment E=8.8e-39

Best Hits

KEGG orthology group: K09691, lipopolysaccharide transport system ATP-binding protein (inferred from 91% identity to pfo:Pfl01_5685)

MetaCyc: 60% identical to O:8-antigen ABC transporter ATP-binding subunit (Escherichia coli O8)
TRANS-RXN-445 [EC: 7.5.2.14]

Predicted SEED Role

"Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)" in subsystem Rhamnose containing glycans or Teichoic and lipoteichoic acids biosynthesis (EC 3.6.3.40)

MetaCyc Pathways

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.40

Use Curated BLAST to search for 3.6.3.40 or 7.5.2.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162BLF2 at UniProt or InterPro

Protein Sequence (412 amino acids)

>Pf1N1B4_1962 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) (Pseudomonas fluorescens FW300-N1B4)
VTGLGKAYKQYPTRWSRLAEWLIPFSPIRHRQHWVLQDVAFEIAPGEAVGIVGVNGAGKS
TLLKMITGTTQPTCGQIQLEGRVAALLELGMGFHPEFTGRQNAIMAGQLLGMQVEEIEAL
MPQIEHFAEIGEAIDHPVRTYSSGMQMRLAFSVATARRPDILIVDEALSVGDAYFQHKSF
ERIRSFRRAGTTLLIVSHDRSAIQSICDSAILLENGRMAMHGKPEAVMDYYNALLAEREG
QTVRQEMLADGQVQTVSGTGEAGILSVRMLDERERAIDAAEVGQPVVLEVQVEVRQDIER
LVLGFMIKDRLGQAMYGINTHRQDLALTDLQAGERLTYRFAFVMGLGKGNYSVALSLSRL
DSHLDRNFEWRDYGLVFHVINNRHEDFVGCSWLAAKTTITRAAESIVSEHTP