Protein Info for Pf1N1B4_196 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG137594: Putative iron-regulated membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 145 to 168 (24 residues), see Phobius details amino acids 197 to 217 (21 residues), see Phobius details amino acids 339 to 363 (25 residues), see Phobius details PF03929: PepSY_TM" amino acids 12 to 366 (355 residues), 217.7 bits, see alignment E=3.3e-68 PF03413: PepSY" amino acids 61 to 117 (57 residues), 35.7 bits, see alignment 8.6e-13

Best Hits

KEGG orthology group: None (inferred from 84% identity to pba:PSEBR_a3948)

Predicted SEED Role

"FIG137594: Putative iron-regulated membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A162AQ98 at UniProt or InterPro

Protein Sequence (401 amino acids)

>Pf1N1B4_196 FIG137594: Putative iron-regulated membrane protein (Pseudomonas fluorescens FW300-N1B4)
MSKKSRSKLWFLVHSWLALPIWFFVLIVCVTGTLAVVSQEIVWLANPQMRASAPSDDAPL
LSYDQIIAAIKKAEPQTLVESISRPDESHFALDVDVSYPDGRSVTVYVNPYSGVIQGTAP
QFNFKAFTRALHGWWLVPFTNGYSWGWYLVSFLGLPMLASLVTGLVVYKRFWKGFFRPTL
RIRHGARIFWGDFHRLSGIWSIWFIAVISITGVWFLIKAILFDNQISITTEPVVSVVSRE
SVPLTSTGKPAPMISLEQAIKVAQEQIPGLEASFVSLPGNAYSHLSVGGRSWYPLMFQTA
EVNPYNGDIASTRLLSDRSSLEFVTESMRPLHTGDFGGIWIKLIWFFFGLLLSMMVLSGL
LIWTKRTALATANAFKRSNKAPLPVPRPQTVMNQQTPEGNL