Protein Info for Pf1N1B4_195 in Pseudomonas fluorescens FW300-N1B4

Annotation: PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 PF00903: Glyoxalase" amino acids 20 to 127 (108 residues), 41.4 bits, see alignment E=1.7e-14 PF18029: Glyoxalase_6" amino acids 21 to 127 (107 residues), 34.3 bits, see alignment E=3.3e-12

Best Hits

KEGG orthology group: K04750, PhnB protein (inferred from 89% identity to pfo:Pfl01_3921)

Predicted SEED Role

"PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MHB5 at UniProt or InterPro

Protein Sequence (152 amino acids)

>Pf1N1B4_195 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein (Pseudomonas fluorescens FW300-N1B4)
MSVKPIPEGYHSITPYLGIQKAAEAIDFYKKAFGATEVMRLAMPDGGIGHAELRIGDCPI
MLGTPCDQGPLSNPDKSPSVGLHLYVNDVDKSFKQAIDAGATVVSEVKDQFYGDRSGTLK
DPYGHLWFLATHKEDLTQEQIEQRAKEMFKQG