Protein Info for Pf1N1B4_1827 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG00953482: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 653 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13387: DUF4105" amino acids 273 to 441 (169 residues), 93.9 bits, see alignment E=4.9e-31

Best Hits

KEGG orthology group: None (inferred from 88% identity to pfo:Pfl01_0106)

Predicted SEED Role

"FIG00953482: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z1V7 at UniProt or InterPro

Protein Sequence (653 amino acids)

>Pf1N1B4_1827 FIG00953482: hypothetical protein (Pseudomonas fluorescens FW300-N1B4)
VKSLGAWLLAGVVLLLGNTAQASLQLRLKTDGLSPAQQQASQALLDEAMQALPPRFIEQL
DRRIDVGWTDDMPSDAYGQASLVSELDLNRNLLASLTNGSAATQKTYRPHGSVRREMLAT
VLHELTHIYDRARLWPAAERTLIQRCTQRNSSSGLIGIPDQCRGQTERRWTLSDDPRLLD
LAGWPQYVGRRGEREQHNRQIARSPDIYETSSPKEFVAVNMEYFLLDPSYACRRPALYRY
YKEHFGWAPAAKDTCAQSFAFLNAGNDFAKQPLGQVDPERVYAVDYLLAEANQNWVSRWG
HSMLRLVICAPGRPRGPDCRLDLDQHLVLSYRAFVGDLQLSSWDGLVGKYPSRLFVLPLA
QVIDEYTKTELRSLASVPLNLSHSEVEDVVEHAAEMHWSYDGNYFFLSNNCAVEGLKLLR
SSTNNAQLVGLDSIMPNGLLEVLKGRGLADTSVLDDSREALRLGYRFDSFRERYQAMFEV
LKKHLPIKQDKVEDWLSLKAEERRKWIDQADLRTSAALLLLEQASFRQQMVLAQDEVKQR
YLGARELKNGGMDKANATLQEILANSGFLSRPAELLGTGGYGLPQANEWTRLESESNLRQ
KQLQALTGDLDKEVRALLEPSRAAEMAANEANLKQVGEHLRKLHKAAGGLELP