Protein Info for Pf1N1B4_1799 in Pseudomonas fluorescens FW300-N1B4
Annotation: T1SS secreted agglutinin RTX
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"T1SS secreted agglutinin RTX"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A166NE14 at UniProt or InterPro
Protein Sequence (4209 amino acids)
>Pf1N1B4_1799 T1SS secreted agglutinin RTX (Pseudomonas fluorescens FW300-N1B4) MSSVVAIVKSIVGQVFAVSPEGVRRVLVEGDRLLVGDQVDTGAAGAITLELADGRTLDLG RDTQWSGSEPDSSTDLAQATAQAAPSVDELQQAIAAGVDPTTALEATAAGPTAASGGGST GGGHSFVALEATAARVDPTIGFPTEGLATAALATQDTTGGQTADTSANALRESTLSLSAT PTITEAGGVLVYTATLTQAPLTDLTITLSNGSVIVIAAGQTTGTVNVPLAPNDTVYNDST QINVTVTGTTGGSGIVVTPPTVPAVTQVTDTVDTTTVTLSAGSTVTEGGQITYTATLTNP AQTPVTVTLSNGSTITIAAGNTTGSVNVPTPANDVYNNGSTVSTTITGATGGNFENLVPN PTPAVTTITDSADTTTVTLTAGSTVTEGGQITYTATLTNPAQTPVTVTLSNGSTITIDAG QTTGSVNVPTPANDVYNNGSTVSTTISGTTGGNFESLVPNPTPAVTTITDSVDNTGLTLS ATGSVTEGGQITYTATLTNPAQTPVTVTLSNGSTITIEAGKTTGSVNVDTPANDVYNNGS TVSTTITGATGGNFENLVPSTTPAVTTITDSIDNTGLSLSATGTVLEGGQITYTATLTNP AGTPMTVTLSNGSVITIEAGKTTGSVTVDTPANDVYNNGSTVSTTITGTTGGNFEQLTPS SEPALTIITDSKDDTGLSLSASTEVAEGGQILYTATLTNPAGTPVTVTLSNGAVITIAAG ATTGSVSVDAPADDVYKDAGKVEVTITDAAGGNFENLVTDPAAAVTEVTDTLDTSTVNLT ATSTVAEGGTVVYTASVNAPVTGSPVVVTLSNGQTITIPVGSSSGSVNFVAPNDALAGGS SLSVKIDGATGGNYEKLDIDGKSADTSVTDTADTTNLSLTATGAVDEGGQITYTATLTNA AGTPVTVTLSNGAVITIEAGKTTGSVTVDAPKDDVYKDTGTVEATIKGATGGNFENLVAS DTPAVTTVNDTIDTSTVSLSATSSVAEGGTVIYTASVSAPVTGSPMVVTLSNGQTITIPV GSSSGSVDFVAPNDALAGGSSLSVKIDDAKGGNYEKLEVDGKSADTSVTDTADTTTLSLS ATDSVAEGGSIVYTATLTNAAGTPVTVTLSNGAVITIAAGATTGSVTVDAPKDDVYKDAG QVEVTIKDAAGGNFENLATNPAAAVTEVTDTLDTSTVNLTATSTVAEGGTVVYTASVSAP VTGSPVVVTLSNGQTITIPVGSSSGSVNFVAPNDALAGGGSLSVKIDDAKGGNYEKLEVD GTSADTSVTDTADTTNLSLTATGTVDEGGQITYTATLTNAAGTPVTVTLSNGAVITIEAG KTTGSVTIDAPKDDVYKDTGTVEATIKGATGGNFENLVASDTPAVTTVNDTIDTSTVSLS ATANVAEGETVVYTATVNAPVTGAPVVVTLSNGQIITIPVGETTGSVNFVAPNSPLAGGS SLSVKIDGATGGNYEKLEVDGKSADTSVTDTADTTTLSLSATDSVAEGGSIVYTATLTNA AGTPVTVTLSNGAIITIAAGATTGSVTVDAPKDDVYKDAGQVEVTIKDAAGGNFENLATN PAAAVTDVTDTLDTSTVNLTATSTVAEGGTVIYTASVSAPVTGSPVVVTLSNGQSITIPV GSSSASVNFTAPNDALAGGGSLSVKIDDAKGGNYEKLEVDGKSADTSVTDTADTTNLSLT ATGAVDEGGQITYTATLTNVAGTPVTVTLSNGAVITIEAGKTTGSVTVDAPKDDVYKDAG TVEATIKDATGGNFENLVASDTPAVTTVNDTIDASIVSLTATSSITEGGTVVYTASVSAP VTGSPVVVTLSNGQTITIPVGSSSGSVNFVAPNDALAGGNSLSVKIDDAKGGNYEKLEVD GKSADTSVTDTADTTTLSLSATDSVAEGGSIVYTATLTNPAGTPVTVTLSNGAIITIAAG ATTGSVTVDAPKDDVYKDAGQIEVTIKDAAGGNFENLATNPAAAVTDVTDTLDTSTVNLT ATSTVAEGGTVVYTASVSAPVTGSPVVVTLSNGQTITIPVGSSSASVNFTAPNDALAGGG SLSVKIDDAKGGNYEKLDVDGKSADTSITDTSDTTTLSLSATDSVAEGGSIVYTATLTNA AGTPVTVTLSNGAVITIAAGATSGSVTVDAPKDDVYKDAGTVEVTIKNAAGGNFENLTTS PAAAVTDVTDTLDTSTVNLTATSTVAEGGTVVYTASVSAPVTGSPVVVTLSNGQTITIPV GSSSGSVNFVAPNDALAGGGSLSVKIDDAKGGNYEKLEVDGKSADTSVTDTPETTTLSLS ATDSVAEGGSIVYTATLTNAPGTPVTVTLSNGAIITIAAGATSGSVTVDAPKDDVYKDAG QVEVTIKDAAGGNFENLTTSPAAAVTDVTDTLDTSTVNLTATSTVAEGGTVVYTASVSAP VTGSPVVVTLSNGQTITIPVGSSSGSVNFVAPNDALAGGGSLSVKIDDAKGGNYEKLEVD GKSADTSVTDTPDTTNLSLTATDSVAEGGSIVYTATLTNAAGTPVTVTLSNGAVITIAAG ATAGSVTVDAPKDDVYKDAGQVEVTIKDAAGGNFENLATNPAAAVTDVTDTLDTSTVNLT ATSTVAEGGTVVYTASVSAPVTGSPVVVTLSNGQTITIPIGSSSASVNFTAPNDALTGGS SLSVKIDDAKGGNYEKLEIDGKSADTSVTDTADTTNLSLTATGTVDEGGQITYTATLTNA AGTPVTVTLSNGAVITIDAGKTTGTVTVPAPSDDVYKDTGTVQATISTATGGNFENLVPS TAPAVTSITDTLDTSTVTLNATASATEGGTVTYTATVGAPVTGSPVTVSLANGQTITIEV GKTTGTVTTAAPNDALAGHVPLTNSITSVSGGNYENLVADKTPVSTTVTDTVDTTNLSLS ATNSVAEGSQITYTATLTNAAGTPVTVTLSNGAVITIDAGKTTGTVTVDAPKDDVYKDAG TVEATITGATGGNFENLVTSNTAAVTTVTDTIDKTEVSISGSTSVTEGQTASYTVSLTHP AQTEVTLKIVYSGTAADGSDFTGVYTVKIPAGASSANFNVATLDDKLTEGTENFVVKIDS ATGGNFENLAVSTTNGSVSTSITDNDAAPVLDLDANNSSGATGANYNVTFTEGTTGQGVS IGDTDLKITDPDSTMLTGATIVLTNRQPGDALNLGNSVNGISINANSQDGTVTLTLSGNA TLADYMQQIKNISFTNSSEDPSTVPRIITVTVTDGSNYSNTATTTVNVVAVNDVPTAAPV NVTGTEDTPLILGWSTFGVSDVDSATANLGVKITQLPGDGKLQYLDGATWKDVATNQTFS KADIDAGKLRFTPDANESGIDGYGGSGLGNKQADYAQIKFQPTDGQLLGNTGTVKIDITP VADAPSLSVADNSVKSTGLIKEVWTGLSGLGTNGSGAATDTLKSVIDGAGTPNSSSTVTN VQSNGGVTAGTASKTSGLIYLEAGKTYTFSGTGDDSLLVTIGGKNVAAITWGAGGNLNGS FIPTTSGYYTLDIYHHNQNGPGSYDVNLSVNGGAAVDLSSAGVPLYTGVADLAASGMTVS DLHGTNGEGYYDGYKLNEGAEGTSVHLSAIKTALTDTDGSESLSVKISGMPEGSVLSDGA GHTFTTTNGEANVTGWNLGTLTVTPPPYYNGQFTLTVTSTSTEAHGGSAPSTAQIPVTVY PAVYNATTATAADDTITGTDGNDIMVADIGGLTVVPGTNYNIAFMVDSSGSMSASSISAA KDSLTAVFNTLKQSMGGNSGTVKIFLVDFDNQVNKSVSVNLNDPNALTLLKSVLDSMSSG GGTNYEDVFKTTANWFQSADAMANTGAKNLTYFITDGKPTYYQGGEQTNPTLFGNVRLDD VITTTNYKLGQTYSDYLDSTHYLTIDSAGNVTLQTQNKKGNWHSSELGTLHAEGNGTYEL SYRDGTGYSTDSTAIDNSSIGFTLLSNVSTVEAIGLNTDVTLGDLKPYDSDQTPQTNIDP KDLANSIIGHTEATMPGADTVSGGDGNDLLFGDLVSFNGIAGEGYQAMQAFVAQQTGVDA SKVTTSNVHQYITEHYTAFDVSGAHDGNDTLLGGAGNDILFGQGGNDLLDGGKGNDILLG GSGNDSLIGGQGNDILIGGSGADTFIWKAGDTGSDVIKDFKASEGDRIDLRDLLQGETGS TIDNFLKITTVDGVSSLQVSSGGKFNGADAAAATPDVTIKLEGNNWSSASINSLIAGSDP TIKVDHNNS