Protein Info for Pf1N1B4_1761 in Pseudomonas fluorescens FW300-N1B4

Annotation: Fibronectin type III domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 PF14252: DUF4347" amino acids 88 to 246 (159 residues), 182.4 bits, see alignment E=2.9e-58

Best Hits

Predicted SEED Role

"Fibronectin type III domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NDB3 at UniProt or InterPro

Protein Sequence (366 amino acids)

>Pf1N1B4_1761 Fibronectin type III domain protein (Pseudomonas fluorescens FW300-N1B4)
MWWSKGKSRVTEGARALASPMIMSLEPRMLFDGAVTATVADTAQADSHATAEAVKAPTAD
QPVASKDTHGQADATPAPAPAAVPGQSVVFVDSRVKDVDSLLQGVAPGTQVVQLDASKDG
LQQIADYLDGHQGISSVQIIAHGNAGDLWLGNSYLSADNIADRSAVLAEIGKDMNVGGDI
LIYGCYTADGERGLNFIDSLAQLTGRDVAASSDRTGLGGDWDLEIATGNIESANVLSTTA
MSDYQWGLATWTATNNANTGVGSLRAALASAQNGDIVTFSSSMTVQLTSELLINKNITVD
GDLNNDGAADVILDGQYRTRVIEVTAGSIVTLDGLVITRGLVSGNGGNGGYGATGAMAGG
FSTQGF