Protein Info for Pf1N1B4_1760 in Pseudomonas fluorescens FW300-N1B4

Annotation: Fibronectin type III domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1282 PF19078: Big_12" amino acids 242 to 340 (99 residues), 115.7 bits, see alignment 1.5e-37 amino acids 341 to 442 (102 residues), 126.2 bits, see alignment E=8.4e-41 amino acids 443 to 544 (102 residues), 134.8 bits, see alignment E=1.8e-43 amino acids 545 to 646 (102 residues), 132.9 bits, see alignment E=7e-43 amino acids 647 to 748 (102 residues), 137.9 bits, see alignment E=1.9e-44 amino acids 749 to 850 (102 residues), 132.5 bits, see alignment E=9e-43 amino acids 851 to 953 (103 residues), 119.9 bits, see alignment E=7.6e-39 amino acids 954 to 1055 (102 residues), 137 bits, see alignment E=3.7e-44 amino acids 1056 to 1157 (102 residues), 131.5 bits, see alignment E=1.9e-42 amino acids 1158 to 1259 (102 residues), 129.8 bits, see alignment E=6.3e-42

Best Hits

Predicted SEED Role

"Fibronectin type III domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1282 amino acids)

>Pf1N1B4_1760 Fibronectin type III domain protein (Pseudomonas fluorescens FW300-N1B4)
LTLNNVSVTSNGASGGGGGGGVTGAFYGGGGGGGGGLGGQGGGHGGSAGPGTGTLGGQAG
VGGVGGYGGGYDATHMGGRGGTTTGGAGGVGVSYYSNGGNGATATNGTISIGGGGGGAGW
DKVGGAGGNAVGGIYNASSGTITIVGTSTISNNIGAGGGGGGGGGQGSNASNGGIGGRGV
GAIWNKGTLLMTAANFAALAGNAAASGAGGTAQGGGSTGTSPTSVATIYNDGGVLNTAYS
PPPTATIVVADTTLSIGETSLVTITFSEVVTGLTNADLTIANGTLTAVSSGDGGITWTAT
FTPSASISDTTNVITLDNTGVINILGTAGVGTTNSNNYTVDTVRPTASIVFTDTALRIGE
TSLVTITFNEAVTGLTNADLTIANGTLTAVSSGDGGITWTATFTPSASITDTSNLITLDN
TGVNDLVGNAGSGTTDSNNYAIDTVRPTATIVVTDNALRIGETSLVTITFSEAVSGFTNA
DLSIANGTLSAVSSSDGGITWTATFTPSASTNDATNLITLNNTGVADLAGNTGSGTTDSN
NYAIDTLRPTATIVVTDNALRIGETSLVTITFNEAVSGFTNADLTIANGTLSAVSSSDGG
ITWTATFTPTASITDTTNLITLDNTGVADLVGNAGSGTTDSNNYAVDTVRPTATIVVADT
ALRIGETSLVTITFSEAVSGFTNADLTIANGTLSAVSSSDGGITWTATFTPSASINDTTN
LITLDNTGIADLAGNAGSGTTDSNNYAIDTVRPTATIVLADTALTAGETSLVTITFSEAV
SGFTNADLTIANGTLSAVSSSDGGITWTATFTPTVGVSDPSNVITLNNTGVADIAGNTGS
GTTSSGNYTIDTVLPTATIVVADNALRIGETSLVTITFSEAVSGFSNADLTIANGTLTAV
SSSDGGITWTATFTPTVSITDATNLITLDNTGVQAAATGNVGSGTTDSNNYAIDTVRPTA
TIVVTDTALRIGETSLVTITFSEAVSGFTNADLTIANGTLSAVSSSDGGITWTATFTPSA
SINDTTNLITLDNTGIADLAGNAGSGTTDSNNYAIDTVRPTATIVLADTTLAAGETSLVT
ITFSEAVSGFTNADLSIANGTLSAVSSSDGGITWTATFTPTVGVSDPSNVITLNNTGVAD
IAGNTGSGTTSSGNYTIDTVLPTATIVVADNALKIGETSLVTMTFSEAVSGFSNADLTIA
NGTLSAVSSSDGGITWTATFTPTNAITDTTNLITLDNSGVQNASGNAGSGTTDSNNYAID
TVRPTATIVVADAALGWGRHRY