Protein Info for Pf1N1B4_1723 in Pseudomonas fluorescens FW300-N1B4

Annotation: FIG028593: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 172 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 94 to 117 (24 residues), see Phobius details amino acids 128 to 147 (20 residues), see Phobius details PF06127: Mpo1-like" amino acids 1 to 143 (143 residues), 72.3 bits, see alignment E=1.5e-24

Best Hits

KEGG orthology group: None (inferred from 81% identity to pfo:Pfl01_0198)

Predicted SEED Role

"FIG028593: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161Z6I4 at UniProt or InterPro

Protein Sequence (172 amino acids)

>Pf1N1B4_1723 FIG028593: membrane protein (Pseudomonas fluorescens FW300-N1B4)
MKSLVDHLSQYAAYHRDPRNIASHFIGIPLIVVAVAVLLSRPQWGAGWISPAVLVAMASA
WFYLRLEVRLGVLMTVLLGLCIWAGQVLAQQSTLVWLASGIGMFVVGWAIQFVGHYYEGR
KPAFVDDVTGLIVGPLFVVVELAFLLGMRRELKEQIEARVGGVRLRQKNAAA