Protein Info for Pf1N1B4_1706 in Pseudomonas fluorescens FW300-N1B4

Annotation: RND efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1017 transmembrane" amino acids 17 to 36 (20 residues), see Phobius details amino acids 335 to 355 (21 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details amino acids 392 to 414 (23 residues), see Phobius details amino acids 430 to 454 (25 residues), see Phobius details amino acids 464 to 489 (26 residues), see Phobius details amino acids 523 to 543 (21 residues), see Phobius details amino acids 770 to 786 (17 residues), see Phobius details amino acids 856 to 874 (19 residues), see Phobius details amino acids 881 to 900 (20 residues), see Phobius details amino acids 906 to 929 (24 residues), see Phobius details amino acids 957 to 976 (20 residues), see Phobius details amino acids 982 to 1006 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 8 to 1004 (997 residues), 547 bits, see alignment E=4.2e-168

Best Hits

KEGG orthology group: None (inferred from 93% identity to pba:PSEBR_a239)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NC02 at UniProt or InterPro

Protein Sequence (1017 amino acids)

>Pf1N1B4_1706 RND efflux transporter (Pseudomonas fluorescens FW300-N1B4)
MKGSFNLSEWALKHQSFVWYLMFVALLMGVFSYLNLGREEDPSFTIKTMVIQTRWPGATQ
EQTLKQVTDRIEKKLEELDSLDYVKSYTRPGESTVFVNLLDTTSAKDIPQIWYQVRKKIN
DIRGDFPKGLQGPGFNDEFGDVFGSVYAFTADGLSMRQLRDYVEQVRAEIREVPGLGKVE
MVGEQDEVLYLNFSTRKLAALGIDQRQVVQSLQSQNAVTPAGVIEAGPERISVRTSGQFA
SEKDLANVNLKLNDRFYRLADIANISRGYVDPATPEFRFNGQPAIGLAIAMKKGGNIQDF
GKALHLRMDELTADLPVGVGVHNVSDQADVVEEAVGGFTSALFEAVVIVLIVSFVSLGVR
AGLVVACSIPLVLAMVFLFMEYSGITMQRISLGALIIALGLLVDDAMITVEMMVTRLEMG
ETKEQAATFAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVAMLVSWIV
AVLFAPVLGVHILSANVKPHDAEPGRIGRAFNGGLLWAMRNRWWAIGITVALFVLSVFSM
QFVQNQFFPSSDRPEILVDLNLPQNASIAETRKVVDKLEATLKDDPDIVRWSTYIGEGAI
RFYLPLDQQLQNPYYAQLVIVSKGLESRTALTARLQKRLREEFVGVGSYVQALEMGPPVG
RPIQYRVSGKDIDQVRKHAIALATELDKNSHIGEIIYDWNEPGKVLRIDIAQDRARQLGL
SSEDVANLMNSIVVGLPVTQVDDDIYLINVVGRAEDAERGSPKTLENLQIVTPSGTSIPL
LAFATVRYELEQPLVWRRDRKPTITIKAAVRDEIQPTDLVQQLKPDIDKFAASLPVGYKV
ATGGTVEESGKAQGPIAKVVPLMLFLMATFLMIQLHSVQKLFLVASVAPLGLIGVVLALI
PTGTPMGFVAILGILALIGIIIRNSVILVTQIDSFEKNGYTPWDAVVQATEHRRRPILLT
AAAASLGMIPIAREVFWGPMAYAMIGGIIIATLLTLLFLPALYVAWYKVREPKKEPA