Protein Info for Pf1N1B4_1697 in Pseudomonas fluorescens FW300-N1B4

Annotation: Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 413 TIGR04022: sulfur acquisition oxidoreductase, SfnB family" amino acids 22 to 413 (392 residues), 604 bits, see alignment E=5.6e-186 PF02771: Acyl-CoA_dh_N" amino acids 42 to 134 (93 residues), 44.5 bits, see alignment E=3.6e-15 PF02770: Acyl-CoA_dh_M" amino acids 149 to 228 (80 residues), 36.2 bits, see alignment E=1.1e-12 PF08028: Acyl-CoA_dh_2" amino acids 255 to 388 (134 residues), 71 bits, see alignment E=2.5e-23 PF00441: Acyl-CoA_dh_1" amino acids 256 to 385 (130 residues), 32.2 bits, see alignment E=2.3e-11

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfo:Pfl01_0240)

Predicted SEED Role

"Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NBT6 at UniProt or InterPro

Protein Sequence (413 amino acids)

>Pf1N1B4_1697 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme (Pseudomonas fluorescens FW300-N1B4)
MSSLADAIVQSDLDIAPLLLPAQVLRNDAQAIKAAHELAQVARLQAAKRDQQRKLPWAEI
EQFTRSGLGSISIPREYGGPQVSFVTLASVFAIISAADPALGQIPQNQFGILNLILGSAT
ESQKKQLFKSVLEGWRIGNAGPERGTKNTLELKARISADGDGFVINGQKFYSTGALFAHW
VAVKALNDDGKQVLAFVRRGTPGLRIVDDWSGFGQRTTASGTILLNNVRVDAELVVDNWK
INDSPNTQGAVSQLIQAAIDAGIARGAIDDAIEFVQKRARPWIDAKVDRASDDLYVIADI
GKLKIELHAAEALLRKAGQVLDQVNAAPLTAESAARASIAVAEAKVLTTEISLLASEKLF
ELAGSRATLAEFNLDRHWRNARVHTLHDPVRWKYHAVGAYHLNGTLPARHSWI