Protein Info for Pf1N1B4_1676 in Pseudomonas fluorescens FW300-N1B4

Annotation: Inner membrane component of tripartite multidrug resistance system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 28 to 48 (21 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 97 to 117 (21 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details amino acids 156 to 170 (15 residues), see Phobius details amino acids 186 to 206 (21 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 245 to 267 (23 residues), see Phobius details amino acids 287 to 311 (25 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details amino acids 354 to 378 (25 residues), see Phobius details amino acids 384 to 404 (21 residues), see Phobius details amino acids 424 to 443 (20 residues), see Phobius details amino acids 481 to 502 (22 residues), see Phobius details PF07690: MFS_1" amino acids 36 to 313 (278 residues), 75.2 bits, see alignment E=2.4e-25

Best Hits

KEGG orthology group: None (inferred from 91% identity to pfo:Pfl01_0142)

Predicted SEED Role

"Inner membrane component of tripartite multidrug resistance system" in subsystem Multidrug Resistance, Tripartite Systems Found in Gram Negative Bacteria

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166NBD2 at UniProt or InterPro

Protein Sequence (512 amino acids)

>Pf1N1B4_1676 Inner membrane component of tripartite multidrug resistance system (Pseudomonas fluorescens FW300-N1B4)
MTSLTVTAPLAAAKPTAAVAPPVFGPRIIIGLVGVLLAVLMSGLNEMVTKVALADIRGAL
SIGYDEGTWLVASYTATSVAAMAFAPWCSVTFSLRRFTLYAISAFTLLGVLCPFAPNYES
LLVMRTFQGLAGGALPPMLMTVALRFLPANVKLYGLAGYALTATFGPGLGTPLAGLWTEY
VGWQWTFWQIVVPCLFAMAAVAYGLPQDPLRLERFKSFNWRGLLLGFPAICMLVIGILQG
NRLDWFESSLICGLLGGGLLLLVLFLINEWSQPIPFFKLQMLGIRNLSFALLTLAGVLVV
LLAVVIIPSSYLAQVQGYRPVQTAPIMLLAALPQLIALPLVAALCNLRWVDCRWVLGIGL
SMLTLSCLGGSQLTSAWIRDDFYVLQWLQIFGQPMAVLPLLMLSTGSITPMEGPYASAWF
NTVKGLAAVIATGVIEALTTARLHFHSTMLVDNLGNSPLVDSDSAGLAHRLHQQAVVLTS
SDLYLCMAGVAVALILLIFWLPTRIYPPRAPT