Protein Info for Pf1N1B4_1601 in Pseudomonas fluorescens FW300-N1B4

Annotation: GTP-binding protein TypA/BipA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 501 PF00009: GTP_EFTU" amino acids 1 to 90 (90 residues), 38.1 bits, see alignment E=2.5e-13 PF03144: GTP_EFTU_D2" amino acids 114 to 184 (71 residues), 41.1 bits, see alignment E=4e-14 PF00679: EFG_C" amino acids 291 to 372 (82 residues), 77.8 bits, see alignment E=1e-25 PF21018: BipA_C" amino acids 380 to 489 (110 residues), 158 bits, see alignment E=1.3e-50

Best Hits

Swiss-Prot: 68% identical to TYPA_SHIFL: GTP-binding protein TypA/BipA (typA) from Shigella flexneri

KEGG orthology group: K06207, GTP-binding protein (inferred from 97% identity to pfs:PFLU0350)

Predicted SEED Role

"GTP-binding protein TypA/BipA" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (501 amino acids)

>Pf1N1B4_1601 GTP-binding protein TypA/BipA (Pseudomonas fluorescens FW300-N1B4)
MPQTRFVTKKAFEAGLRPIVVINKVDRPGARPDWVLDQIFDLFDNLGATEEQLDFKVVYA
SALNGIAGLEHTDMAEDMTPLYQSIVDNVPAPKVDRDGPFQMQISALDYNSFLGVIGVGR
IARGRVKPNTPVVAIGADGKKRNGRILKLMGHHGLHRVDVEEAAAGDIVCISGMDSLFIS
DTLCHPDTVEAMKPLTVDEPTVSMTFQVNDSPFCGKEGKFVTSRNIKERLDKELLYNVAL
RVEEGDSADKFKVSGRGELHLSVLIETMRREGFEMAVGRPEVIIRLVDGVKHEPFENVTI
DLPEESQGKVMEEMGLRKGDLTNMVPDGKGRVRLEYNIPARGLIGFRNQFLTLTNGAGIL
TSIFDRYDVMKSGDMSGRQNGVLVSVETGKALTYSLETLQARGKLFVEHGQEIYNGQIVG
LNSRDNDLGVNPTKGKKLDNMRASGKDETIALVPPVRFTLEQALEFIQDDELCEVTPKSI
RLRKKILDESERTRAAKKAKA