Protein Info for Pf1N1B4_1573 in Pseudomonas fluorescens FW300-N1B4

Annotation: Glucans biosynthesis protein G precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 591 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF04349: MdoG" amino acids 28 to 500 (473 residues), 626.8 bits, see alignment E=1.5e-192

Best Hits

Swiss-Prot: 74% identical to OPGG_PSEPW: Glucans biosynthesis protein G (opgG) from Pseudomonas putida (strain W619)

KEGG orthology group: K03670, periplasmic glucans biosynthesis protein (inferred from 86% identity to pfl:PFL_0413)

Predicted SEED Role

"Glucans biosynthesis protein G precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166N9F5 at UniProt or InterPro

Protein Sequence (591 amino acids)

>Pf1N1B4_1573 Glucans biosynthesis protein G precursor (Pseudomonas fluorescens FW300-N1B4)
LSAKRFRSALVAGSALLCLFSAGQLWAFNLDDVSVKAKELAGQKYEAPRSNLPNEFREMK
FADYQKIRFLTEKAEWANQKTPFKLSFYHQGMHFDTPVKINEITANTVEEIKYDPSRFDF
GDVKFDPKATEQLGYAGFRVLYPINKADKQDEIMTMLGASYFRVIGKGQTYGLSARGMAI
DTALPSGEEFPRFTEFWIQQPKPGDKHLVIFALLDSPRATGAYRLTVRPGSDTVVDVKAK
MFLRDKVTKLGVAPLTSMFLFGANQPSKVLNYRRELHDSSGLSIHAGNGEWIWRPLNNPK
HLAVSNFSIENPRGFGLLQRGRDFSHYEDLDDRYDKRPSAWIEPKGDWGKGSVDLVEIPT
ADETNDNIVAFWSPEKLPEPGQSLDVAYRMHWTLDEASLHSPDSAWVQQTLRSTGDVKQS
NLIRQPDGSVAYLVDFQGPSLQVLPEDAEVRSQVSVGDNAELVENSVRYNPETKGWRLTL
RMKIKDPSKATEMRAALVKTITPAEALKTAAPASSSSVAKADKIAARQQEKKDKEAKQAE
AQAQQVKDTKDKDNKDAKQPVAAEAAPATTESAPTEQVLTETWSYQLPADE