Protein Info for Pf1N1B4_152 in Pseudomonas fluorescens FW300-N1B4

Annotation: ABC transporter, permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 transmembrane" amino acids 29 to 50 (22 residues), see Phobius details amino acids 62 to 83 (22 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 130 to 151 (22 residues), see Phobius details amino acids 157 to 175 (19 residues), see Phobius details amino acids 197 to 222 (26 residues), see Phobius details amino acids 228 to 251 (24 residues), see Phobius details amino acids 261 to 281 (21 residues), see Phobius details amino acids 287 to 307 (21 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 349 to 369 (21 residues), see Phobius details PF07690: MFS_1" amino acids 2 to 216 (215 residues), 57.1 bits, see alignment E=7.4e-20 amino acids 205 to 363 (159 residues), 52.9 bits, see alignment E=1.5e-18

Best Hits

KEGG orthology group: None (inferred from 85% identity to pfo:Pfl01_1842)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A166MGE6 at UniProt or InterPro

Protein Sequence (373 amino acids)

>Pf1N1B4_152 ABC transporter, permease protein (Pseudomonas fluorescens FW300-N1B4)
VLAGMLARMPISMTGIGLITMLSQLQGGYGLAGSIAATFALATAFCAPQVSRLVDRFGQS
RILPVSALVGGGALLMLLLCTRLQAPHWTLFAFAALAGCMPSMSAMVRARWTELYRGRPE
LQTAYALESVLDEVCFIVGPPLSVGLCVVAFPEAGPLAALLMLAIGVTAFVLQRGTEPPV
HPYEEHHQGSIIRSSEIQLLILLMVALGTIVGVVDVVSVAFAEQQGQPAAASIVLSVYAI
GSCLAGLAFGVFRSKLPLPQLFLYGGVATAVTTLPLLLAANIFGLSLAVFVAGLFFAPTL
IVAMALVERIVPPAKLTEGLTWLVTGLSIGVAIGAASSGWLVDAFGARSGFWVAITAGSV
VLVSAVQSYRHLK