Protein Info for Pf1N1B4_1481 in Pseudomonas fluorescens FW300-N1B4
Annotation: Protein involved in catabolism of external DNA
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 46% identical to RLMJ_ECOLI: Ribosomal RNA large subunit methyltransferase J (rlmJ) from Escherichia coli (strain K12)
KEGG orthology group: K07115, (no description) (inferred from 94% identity to pfo:Pfl01_0458)MetaCyc: 46% identical to 23S rRNA m6A2030 methyltransferase (Escherichia coli K-12 substr. MG1655)
RXN0-6998 [EC: 2.1.1.266]
Predicted SEED Role
"Protein involved in catabolism of external DNA"
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.1.1.266
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A161Z129 at UniProt or InterPro
Protein Sequence (278 amino acids)
>Pf1N1B4_1481 Protein involved in catabolism of external DNA (Pseudomonas fluorescens FW300-N1B4) MNYRHAFHAGNHADVFKHLTLTRLIALMSRKEQPFAYLDTHAGIGLYDLQGDQASRTGEY LEGIARLWDQPDLPALTADYMKVLHDMNPDGQLRYYPGSPELARRLTRPQDRLMLNEKHP EDGLLLKDNMAGDRRVKVHLGEGWHVPRAMLPVQEKRAVMLIDPPFEQLDEMQRCAASLK EAIGRMRQTVAAIWYPVKDQRMLRRFYQDLAGTGAPKLLRVELLVHPLDTPNSLNGSGLA IANPPWGLEEELRELLPWLSKKLGQTQGGWQMDWLIAE